BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0202.0004.p
         (270 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1980 [S] COG1806 Uncharacterized protein conserved in bacteria     211   1e-54
lin1494 [S] COG1806 Uncharacterized protein conserved in bacteria     207   1e-53
DRC0001 [Q] COG2124 Cytochrome P450                                   119   7e-27

>lin1980 [S] COG1806 Uncharacterized protein conserved in bacteria
          Length = 270

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/262 (44%), Positives = 160/262 (61%), Gaps = 1/262 (0%)

Query: 7   FITICSDSIGDTAEAVVQAVIHQFQ-NQRVTIRRYGNVRHEDELRKLMEETAQLQGFVAY 65
            I + SD+IG+TA+ +++AV  QF  N+   IRR+  +R E+ L + +EE     G V  
Sbjct: 6   IIYVISDAIGETAQHIIRAVTAQFSLNKPADIRRHAFIRDENALLETLEEAKAADGIVVQ 65

Query: 66  TLVQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRRIE 125
           TLVQ +L +      V+  L+ VD++  +  A         +  PG + +LD +YF RI 
Sbjct: 66  TLVQSKLADYASNFCVKNHLQNVDLLHTLTAAVEAKTGLKSKQDPGNMRRLDSNYFDRIA 125

Query: 126 AIEFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPPQQ 185
           AIEF V  DD +D   +L ADIVL+G+SRTSKTPLS +LA++  KV N P+VPEI  P +
Sbjct: 126 AIEFAVKYDDCKDPRGLLDADIVLVGVSRTSKTPLSSYLANQNWKVANVPLVPEIPIPDE 185

Query: 186 LMSLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKLGC 245
           L  +P  R+IGLT   E + +IR  RLK +GL   S Y+S +RI EE+EY    F KLGC
Sbjct: 186 LFQIPAERIIGLTTTPEKLAQIRKVRLKSIGLDEASSYSSEKRILEELEYGYATFKKLGC 245

Query: 246 PVIDITNKAIEETAGIIMGYIT 267
            VI + +KAIEETA +I   IT
Sbjct: 246 QVIHVEDKAIEETAALITEIIT 267


>lin1494 [S] COG1806 Uncharacterized protein conserved in bacteria
          Length = 274

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/259 (41%), Positives = 160/259 (61%)

Query: 8   ITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRKLMEETAQLQGFVAYTL 67
           + + SDS G+TAE V +A + QF      I R+ +V     + ++++  A   G + +T+
Sbjct: 6   VYVVSDSTGETAELVTRAALSQFGQTPKFIHRFHHVDSSHMIEEIVDLVAVNNGIIVHTI 65

Query: 68  VQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRRIEAI 127
           V   +RE + + A    + I+D+ GP++    +T+   P + PG +  +DE YF ++ AI
Sbjct: 66  VLESVREELNKTAQAFGVPIIDLFGPLLNQLEETYKIKPLSEPGRVRSMDEAYFNKVAAI 125

Query: 128 EFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPPQQLM 187
           EF V  DDGR+   +L+AD VL+G+SRTSKTPLS +LA +G K+VN PIVPE   P +L 
Sbjct: 126 EFAVENDDGRNPRGILQADYVLIGISRTSKTPLSQYLALKGLKIVNIPIVPEAQIPDELF 185

Query: 188 SLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKLGCPV 247
            + P ++IGL +  + + KIR ERL  +GLP    YAS +RI EE+     L +KL C V
Sbjct: 186 EIDPKKIIGLKISKQKLTKIRQERLISIGLPGAGTYASNQRIDEELAIFNKLASKLNCFV 245

Query: 248 IDITNKAIEETAGIIMGYI 266
           +D+TNKAIEETA  I+ +I
Sbjct: 246 LDVTNKAIEETANEILIHI 264


>DRC0001 [Q] COG2124 Cytochrome P450
          Length = 103

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 0/256 (0%), Positives = 0/256 (0%)

Query: 8   ITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRKLMEETAQLQGFVAYTL 67
                 +  +    VV+A            +   +     + ++       ++  +++  
Sbjct: 6   RRYSGSTDAEILPYVVEAEPSSPVVHLDISQANRDESVFTQAQQFCPHRKNVRQHLSFGK 65

Query: 68  VQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRRIEAI 127
                                                                       
Sbjct: 66                                                               125

Query: 128 EFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPPQQLM 187
                                                                       
Sbjct: 126                                                              185

Query: 188 SLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKLGCPV 247
                                                                       
Sbjct: 186                                                              245

Query: 248 IDITNKAIEETAGIIM 263
                           
Sbjct: 246                  261


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,434,669
Number of extensions: 830725
Number of successful extensions: 1438
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1434
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 165
Effective length of database: 26,268,361
Effective search space: 4334279565
Effective search space used: 4334279565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)