BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0009.p (243 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0924 [V] COG1131 ABC-type multidrug transport system, ATPase ... 286 3e-77 L50637 [V] COG1131 ABC-type multidrug transport system, ATPase c... 225 4e-59 BS_yfiL [V] COG1131 ABC-type multidrug transport system, ATPase ... 187 2e-47 ZybhF [V] COG1131 ABC-type multidrug transport system, ATPase co... 186 4e-47 ybhF [V] COG1131 ABC-type multidrug transport system, ATPase com... 186 4e-47 >lin0924 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 240 Score = 286 bits (731), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 133/233 (57%), Positives = 181/233 (77%) Query: 8 IAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQVEVL 67 I V+++ G K +L D+SL++E+ E FG++GPSG+GKTTLVK + G+++ATSGQ +VL Sbjct: 6 IDVSNLDVKIGKKPILSDMSLEIEKGEIFGLIGPSGAGKTTLVKTIIGMEKATSGQTKVL 65 Query: 68 GVQMPKLSMLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVVNLQ 127 G MP L ++ +IGYMAQSDALY++L+AKENL+FFASLY ++ + RI +VNLQ Sbjct: 66 GNVMPNLPVISKIGYMAQSDALYTDLTAKENLDFFASLYSIKGAAKKDRINYATNLVNLQ 125 Query: 128 EHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNGKGT 187 L K+V+ +SGGMKRRLSLAI++L +P +LILDEPTVGIDP LRK+IW+EL L G Sbjct: 126 TDLTKKVNNFSGGMKRRLSLAISVLADPDVLILDEPTVGIDPELRKTIWEELDDLKANGK 185 Query: 188 TIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASMEEAFLYYGG 240 I++TTHVMDEAEKCDRLAMIR+G+++A+ TP +L T + +E+AFL +GG Sbjct: 186 CILVTTHVMDEAEKCDRLAMIRNGKIIAIGTPQELSSKTSSGKLEDAFLEFGG 238 >L50637 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 248 Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 105/232 (45%), Positives = 158/232 (68%) Query: 8 IAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQVEVL 67 IA+ + FG K +L +S + E + ++GPSG+GK+T +K + G+ + SG V++L Sbjct: 5 IAINDISVKFGDKAILDHLSYEFESGKIICLIGPSGAGKSTFIKAIVGMQKLDSGNVKIL 64 Query: 68 GVQMPKLSMLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVVNLQ 127 ++P +L ++GYMAQ DAL+ EL+ K+NLEFF SL G++ + ++ VNL Sbjct: 65 ERKIPDREVLGKLGYMAQEDALFKELTGKQNLEFFGSLQGIKKKDLQGKLDKAAATVNLT 124 Query: 128 EHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNGKGT 187 + L + + YSGGM+RRLSLAIAL + P+L+LDEPTVGIDP LR+ IW+ELR +G Sbjct: 125 KQLNQSISNYSGGMQRRLSLAIALQTDAPILLLDEPTVGIDPELRQEIWEELRNQANQGK 184 Query: 188 TIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASMEEAFLYYG 239 TI++TTHVMDEAE+CD + M+R+G+ +A +P ++ + AS+EEAF+ G Sbjct: 185 TILITTHVMDEAERCDVVLMLRNGKFIAEGSPKEIKEKYQVASVEEAFIVAG 236 >BS_yfiL [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 134 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 0/236 (0%), Positives = 0/236 (0%), Gaps = 11/236 (4%) Query: 12 HVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQVEVLGVQM 71 + + L I + + T E + Sbjct: 6 YALKKEKEMMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISGSAIKDDDA 65 Query: 72 PKLSML--QQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVVNLQEH 129 S + + + N + + EV Sbjct: 66 FSDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVENASQLHEVWQKGAD 125 Query: 130 LRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNGKGTTI 189 Sbjct: 126 185 Query: 190 VLTTHVMDEAEK-CDRLAMIRDGQLLAVDTPADLLKNTGA--------ASMEEAFL 236 Sbjct: 186 241 >ZybhF [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 583 Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 145/240 (60%), Gaps = 7/240 (2%) Query: 4 GHPVIAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQ 63 G VI + + FG ++ V++ E FG+LGP+G+GK+T K++ G+ TSGQ Sbjct: 331 GETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQ 390 Query: 64 VEVLGVQMPKLS--MLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVM 121 VLG+ + + S Q +GYMAQ +LY L+ ++NL FF+ +YGLR + +I+ + Sbjct: 391 ALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMS 450 Query: 122 EVVNLQEHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRT 181 E L+ D+ G K+RL+LA +L+HEP +L LDEPT G+DP+ R+ W + + Sbjct: 451 EAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINS 510 Query: 182 LNGKGTTIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGA-----ASMEEAFL 236 + KG T+++TTH MDEAE CDR+ ++ G+L+A TP DL + +ME+AF+ Sbjct: 511 MVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFI 570 Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 118/214 (55%), Gaps = 2/214 (0%) Query: 20 KEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQVEVLGVQMPKL--SML 77 K + + + G++GP G+GKTTL+++L G+ + SG V+G K ++ Sbjct: 25 KPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALH 84 Query: 78 QQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVVNLQEHLRKRVDQY 137 +GYM Q LY +L+ ENL +A L + R + A ++E +L + + Sbjct: 85 AVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKL 144 Query: 138 SGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNGKGTTIVLTTHVMD 197 SGGMK++L LA L+ EP +L+LDEP VG+DP+ R+ +W+ + L G+G I+ +T +D Sbjct: 145 SGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLD 204 Query: 198 EAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASM 231 EAE+C + ++ +G+LL P L + S Sbjct: 205 EAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSF 238 >ybhF [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 583 Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 145/240 (60%), Gaps = 7/240 (2%) Query: 4 GHPVIAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQ 63 G VI + + FG ++ V++ E FG+LGP+G+GK+T K++ G+ TSGQ Sbjct: 331 GETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQ 390 Query: 64 VEVLGVQMPKLS--MLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVM 121 VLG+ + + S Q +GYMAQ +LY L+ ++NL FF+ +YGLR + +I+ + Sbjct: 391 ALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMS 450 Query: 122 EVVNLQEHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRT 181 E L+ D+ G K+RL+LA +L+HEP +L LDEPT G+DP+ R+ W + + Sbjct: 451 EAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINS 510 Query: 182 LNGKGTTIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGA-----ASMEEAFL 236 + KG T+++TTH MDEAE CDR+ ++ G+L+A TP DL + +ME+AF+ Sbjct: 511 MVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFI 570 Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 118/214 (55%), Gaps = 2/214 (0%) Query: 20 KEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQVEVLGVQMPKL--SML 77 K + + + G++GP G+GKTTL+++L G+ + SG V+G K ++ Sbjct: 25 KPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALH 84 Query: 78 QQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVVNLQEHLRKRVDQY 137 +GYM Q LY +L+ ENL +A L + R + A ++E +L + + Sbjct: 85 AVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKL 144 Query: 138 SGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNGKGTTIVLTTHVMD 197 SGGMK++L LA L+ EP +L+LDEP VG+DP+ R+ +W+ + L G+G I+ +T +D Sbjct: 145 SGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLD 204 Query: 198 EAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASM 231 EAE+C + ++ +G+LL P L + S Sbjct: 205 EAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSF 238 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,458,827 Number of extensions: 661922 Number of successful extensions: 9149 Number of sequences better than 1.0e-05: 2199 Number of HSP's gapped: 6157 Number of HSP's successfully gapped: 2465 Length of query: 243 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 140 Effective length of database: 26,499,029 Effective search space: 3709864060 Effective search space used: 3709864060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)