BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0005.p (1113 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 725 0.0 CAC3303 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 475 e-133 CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 452 e-126 FN1160 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 411 e-114 CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 407 e-113 >lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1072 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1063 (38%), Positives = 611/1063 (57%), Gaps = 54/1063 (5%) Query: 58 TIDSDGDVNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFT 117 ++ G N CSC ++ CKHI A + + E+ Q K + T Sbjct: 50 VVEDAGSENYACSCADFQLNA-ICKHIYATHLKMEKEK--------QKAAKQDFKNRILT 100 Query: 118 GKTGVLFPRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEV 177 ++ L L LF+ + + + PLQ + Sbjct: 101 QESNTL--------------------------LSLFQQNMAQQLEVEEDITNKIPLQTQY 134 Query: 178 ICRPFSYNFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFT 237 I R + S ++ IE+KVG +R Y+V+ + FL + + F+K+F YDP H F Sbjct: 135 IIR-LKPDDSSYIMTIEVKVGTERTYVVKNMNTFLAAIRDRQWLVFTKNFAYDPNEHFFL 193 Query: 238 KEDNAVLLKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSV 297 +ED +L KL++I ++Y D Y +S + E+ L IPP LL L + Sbjct: 194 EEDKQILDKLLQISEIAKMY-DTDSFY--WSKSYAEEKNLTIPPSMAGELLELLTERDTT 250 Query: 298 YL----QIGDTLTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEG 353 + ++ D GI + + L F+ ++ D Y L+++ L Q E Y L+ +G Sbjct: 251 CIIMKERVEDIKYRGINVRRDNLDFIFELKKSADDKYQLEMEDLQQAIFFEAYQLLFFDG 310 Query: 354 RLMKLPVQEC-RRLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIA 412 +PV+E L L + ++ + + Q+ + V+P L+K G++ + DSI Sbjct: 311 TFF-IPVKEVWESLKPLIEFHKVTKNEVVQFSESQLSEVISYVLPALQKSGKLKLDDSIE 369 Query: 413 DRIVQTQLQAXXXXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRI 472 DRI Q L LE+ YG + +P E +E I++RD E E R+ Sbjct: 370 DRITQQPLDCKLFIALEYGEHTLRLEYHYGNQLFDPF--AITEEENEKIMIRDVEKEARV 427 Query: 473 LELMAHESFARTESGYIMSDEEGE-YDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPK 531 + ++ + + +++ +E + Y F Y TIP L ++Y ++E +V P Sbjct: 428 MNIIESAPVHFSGTKMVVNKQEKDLYQFYYRTIPKLAEYAEIYMEDGLEE-MVEDNVRPV 486 Query: 532 ASLTWNEKTDWLDFKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIA 591 +L + D+L F GIPE E+ VL+SL+EKR Y+RL +G L LE+ +++ Sbjct: 487 TTLDVSSDNDYLSVSFDFKGIPEEEVQNVLESLREKRSYHRLKNGRFLSLESENYKQMED 546 Query: 592 LMNELGVHAADIKSPEFSLPLVRGLHMNAEAGKGGTDAV-SIGRSFRRLLANMHSPENLD 650 ++ L V D++ P +PL RG+ + G G D RSFR LL ++ + Sbjct: 547 VLQMLEVRKKDVQ-PNMQVPLYRGMQIYDILGAGTQDEHHKFSRSFRELLTDITTQSEDS 605 Query: 651 FPVPETLAPVLRDYQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQT 710 F +P+ L LRDYQ GF+WMK+LA Y GGILADDMGLGKT+Q+I+FL SELE+ Sbjct: 606 FSLPKGLKAELRDYQLTGFEWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEE-NPN 664 Query: 711 GQPALIVAPASLLYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLR 770 +P LIV PASLLYNWQ+EL++FAP+I ++ G R + V + SYP LR Sbjct: 665 LKPVLIVTPASLLYNWQSELEKFAPEIPVTVLHGTKQARMAEMEEIKHGHVYLISYPSLR 724 Query: 771 RDVELYVKRSFHTLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIY 830 +D+ + +F ++I+DE+Q IKN+ T+ +QAV+AL+ + FAL+GTP+EN++++LW+I+ Sbjct: 725 QDIIHFADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIF 784 Query: 831 GVVFPGLFPGKKAFHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKK 890 + PG FP + F ++P E +AK IRPFLLRRLK DV+KELPDKIET SEL EQK Sbjct: 785 QTLMPGFFPSLRKFKEIPYENIAKMIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKT 844 Query: 891 LYVAYLARLRKEALKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQL 950 +Y+AYL +++ + L+ + + + RIK+LAGLTRLRQ+CC P+LFV+ Y G SGK QL Sbjct: 845 IYLAYLEKIQAD-LEESNGNA-SEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQL 902 Query: 951 LEIIGECRSSGKRVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEG 1010 + I R +GKR+LIFSQFT ML +I R+L P FY+DG TP+ R+++ FNEG Sbjct: 903 FDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNEG 962 Query: 1011 ERDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQ 1070 E D+FLISLKAGGTGLNL GADTVILYDLWWNPAVE+QA RAHRIGQK+VVQV R+I + Sbjct: 963 ENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITK 1022 Query: 1071 GTVEDKMYELQQKKKNLIDEVIEPGQEALSALSEQDIREILMI 1113 GT+E+++++LQ+KK+ L+DE+I+PG++ L L+ ++I++IL + Sbjct: 1023 GTIEERIFDLQKKKQALVDELIQPGEQMLGKLNTEEIKQILQL 1065 >CAC3303 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1077 Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust. Identities = 299/944 (31%), Positives = 501/944 (53%), Gaps = 54/944 (5%) Query: 194 ELKVGPK-----RLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAVLLKLI 248 ELK+G K LY+++ I +FL +++ P + K + + + +D L+ I Sbjct: 161 ELKIGLKTMTSNNLYVLKDINSFLLGIYQNIPIPYGKKLILNMKEQKLSVKDKK-LVDFI 219 Query: 249 EILLN-ERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGDTLTP 307 ++++N ++ + N S+ + G + + +P + + + VYL G L+ Sbjct: 220 QMIINIDKPFSYNRKIKKSF---IDG-KYVYVPDYLVREFFQVIK-NHRVYLNEGFDLST 274 Query: 308 GIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQE-CRRL 366 ++I +E P+ + D Y L + I++ + L G + +P E C ++ Sbjct: 275 DVEIIEEKPPIEISLRDVEDD-YVLSVPSGMPISLSSKNNVFLY-GLGIYIPDYEYCEKI 332 Query: 367 SELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSI-ADRIVQTQLQAXXX 425 ++ K+ + ++ + E + K++P LK+L S D+IV + + Sbjct: 333 GPYFEVFNKAEE--VRLSGEKEETILRKLVPDLKRLSNSISLSSNITDKIVVAKCEFKFY 390 Query: 426 XXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFARTE 485 ++ +YG N E +E ++ RD + E +LE + F R + Sbjct: 391 FDNEDGNTILTVKVKYGAFEFNIF-----EDFNEKVIYRDSKREIEVLETVRALRFERIK 445 Query: 486 SGYIMS-DEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGM-YTPKASLTWNEKT--- 540 + +++ ++ + F I L+ + +V+ + K G+ + ++ + KT Sbjct: 446 NKFLLGFGDDYAFTFFKTEIVRLQKIGEVFYSENFK-----GIKHISSKGISGHIKTGKY 500 Query: 541 DWLDFKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHA 600 ++ + KF +D IP E V++L++ ++ KYY+L +G + LE +L+ + L++ + Sbjct: 501 NYFEMKFKIDDIPPGETVMILRAFRDNLKYYKLKNGEFIDLEELQLKNFLKLLDSISPKK 560 Query: 601 ADIKSPEFSLPLVRGLHMNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPV 660 D +P + ++++ + G + +++ ++L+F +P TL Sbjct: 561 LD--ENNIKIPKSKSIYVDEYLEEKGIRYIKGQEELKKIREKFKEEKSLEFELPRTLKGH 618 Query: 661 LRDYQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPA 720 R+YQ+ G+ W+KTL ++ FGGIL D+MGLGKT Q I+FLLS G+ +LIV P Sbjct: 619 PREYQKKGYNWLKTLDYFGFGGILGDEMGLGKTFQVISFLLS------SPGKKSLIVVPT 672 Query: 721 SLLYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRS 780 SL+YNW E +RFAP I A G R + N V+IT+Y LL+RD+ Y+ Sbjct: 673 SLVYNWIQEFERFAPSIKVAASVGTKKEREVIIENLNEFQVIITTYNLLKRDLSSYMALE 732 Query: 781 FHTLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPG 840 F ILDEAQ IKN +Q A +VK + A RFAL+GTP+EN++ +LWSI+ + P Sbjct: 733 FDYCILDEAQNIKNPHSQNAISVKKINAVNRFALSGTPMENSVMELWSIFDFIMPEYLYD 792 Query: 841 KKAF--------HDLPR--ETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKK 890 + F + P E + + I+PF+LRR K +V+KELP+KIE + A ++ +QKK Sbjct: 793 EDRFSVRYYKKLKEEPAVIEDLNRLIKPFILRRKKKEVVKELPNKIEKIVAVDMESKQKK 852 Query: 891 LYVAYLARLRKEALKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQL 950 +Y Y K ++ D F K +I++L+ +TRLRQ+C P++ ++ Y GGS K L Sbjct: 853 VYSTYAKYAVSLIEKRVEYDEFNKSKIEILSYITRLRQICLDPSVVMEDYTGGSAKINAL 912 Query: 951 LEIIGECRSSGKRVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEG 1010 +E++ G ++L+FSQFT +L I+ + + YLDG S R+ + FNEG Sbjct: 913 IELLNHSIDEGHKILVFSQFTSVLKNIAERFREEKIKYSYLDGSINSKNRMNMVQDFNEG 972 Query: 1011 ERDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQ 1070 +FLISLKAGGTGLNLT AD VI +D WWNPAVE+QA DRAHRIGQK +V+VI+L+A+ Sbjct: 973 NNSVFLISLKAGGTGLNLTSADVVIHFDPWWNPAVEEQATDRAHRIGQKNIVEVIKLVAK 1032 Query: 1071 GTVEDKMYELQQKKKNLIDEVIE---PGQEALSALSEQDIREIL 1111 GT+E+K+ LQ++KK L+D ++ E S L E +I E+ Sbjct: 1033 GTIEEKIIRLQEEKKRLVDSLLSEDLSTSEVFSGLDENEIIELF 1076 >CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1052 Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust. Identities = 314/1070 (29%), Positives = 522/1070 (48%), Gaps = 122/1070 (11%) Query: 68 KCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVLFPRD 127 KC+C +N C H+ AVL+ + DG + + + R + G + R+ Sbjct: 78 KCNCSNVKNN-DICSHVGAVLIKYI-----DGKNNVKSDYSKR----LLYGLKQSIIKRE 127 Query: 128 LPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPFSYNFG 187 + + P+ +EV F+ Sbjct: 128 IKGK----------------------------------------PINIEVKLHYFTET-- 145 Query: 188 SRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAVLLKL 247 ++ I ++VG RLY+V+ + FL+ + + + + F Y P +S K D +L Sbjct: 146 TKKSYINIRVGEDRLYVVKDVSTFLKSILENKQIKIGEKFTYYPYKYSIKKRDE----EL 201 Query: 248 IEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGDT-LT 306 E+L +Y DN ++ G+ + S L + + I D +T Sbjct: 202 FELLF--AIYHDNEDVVKDKEKSILGKNIYLTESGL--SRLMIILEDRDFSILINDEGIT 257 Query: 307 PGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQECRRL 366 + DE ++ ++ + + L + G I+++ V +G++ KL + Sbjct: 258 DCYIVVDEFPKINLTIEEKE-ESVKLTLSGGEPISLVRGNKYVFYQGKVYKLDQYKINIY 316 Query: 367 SELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQLQAXXXX 426 S L K+ + S+ + + + V P LK+LG + I ++ ++ Sbjct: 317 SLLIKVFSNSKV--VKYYKEDRQDVLSYVYPVLKELGIAACKNVINYDYLKPKVYMDKID 374 Query: 427 XXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFART-E 485 ++IN E ++ ++D E I++++ F + E Sbjct: 375 E---------------NMLINIKFENNDKK------LKDVNGEVYIIKILQDFGFYKDGE 413 Query: 486 SGYIMSDEEGEYDFLYHTIPLLEPL-LQVYATTAVKERLVTGMYTPKASLTWNEKTDWLD 544 YI + +F+ + ++ ++Y + +K+ V + K SL NE + ++ Sbjct: 414 IIYINDSLDKMVEFMSVGLDKIQSKGYEIYYSENIKKFKVYSPHMYKGSLKVNE-GNMIE 472 Query: 545 FKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADIK 604 F +DGI SE+ + ++L+ K+KYY+L +G ++ L +++I + + + + I Sbjct: 473 VSFEIDGIDNSELYNIFEALRLKKKYYKLKEGEIVDLSNKVIKKIADMFKYMDLDYSKIN 532 Query: 605 SPEFSLPLVRGLHMNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLRDY 664 L ++N + F R++ EN+ +P ++RDY Sbjct: 533 QKPAILSKENAAYINRYIDEENLMFFDKDTRFERMVKLSKGLENMKVGIPNEFNSIMRDY 592 Query: 665 QQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTG--QPALIVAPASL 722 Q+ GF+W K+L H+ GGILAD+MGLGKTLQ+IAF+ S TG + ++I+ P S+ Sbjct: 593 QKRGFRWFKSLDHFGVGGILADEMGLGKTLQTIAFISS------GTGHKETSIIIVPTSI 646 Query: 723 LYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFH 782 +YNW+ E+++F+ + I+ G R++ + DVLITSY L+R D+E Y K F Sbjct: 647 VYNWKEEIEKFSKNLKTLIISGTKRERAEAIGEYYNYDVLITSYSLIRMDIEEYSKIKFK 706 Query: 783 TLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLF---- 838 ILDEAQ IKN + +AVK ++A+ FALTGTP+EN L +LWSI+ + PG Sbjct: 707 YCILDEAQYIKNKNSLITKAVKKIRAKNCFALTGTPIENCLSELWSIFDFIMPGYLLSYS 766 Query: 839 -------------PGKKAFHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELL 885 K+A ++L R I PF+LRRLK V+KELP K+E E+ Sbjct: 767 KFVNKYENPIIKEKDKRALYELNR-----HIEPFILRRLKESVVKELPSKVEHKILIEMS 821 Query: 886 PEQKKLYVAYLARLRKEALKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSG 945 +QK++Y AYL R++ + ++ G + + + LTRLRQ+C +P V+ Y G + Sbjct: 822 QKQKEVYYAYLKNAREKIYRSIEEKGINNSKFIIFSLLTRLRQICSNPRTVVENYNGKNA 881 Query: 946 KFEQLLEIIGECRSSGKRVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCG 1005 K + L++ I ++ R+L+FSQFT +L I +L + YLDG+T R +L Sbjct: 882 KMDVLMDTIKTSIANRHRILVFSQFTSVLKSIKDKLIEKDIDVMYLDGNTKMKDRFQLAD 941 Query: 1006 RFNEGERDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVI 1065 FN+G+ ++FLISLKAGGTGLNLTGAD V+ +D WWNPAVE QA+DRAHRIGQKK V++I Sbjct: 942 EFNKGKGEVFLISLKAGGTGLNLTGADIVVHFDPWWNPAVENQASDRAHRIGQKKNVEII 1001 Query: 1066 RLIAQGTVEDKMYELQQKKKNLIDEVIEPG----QEALSALSEQDIREIL 1111 +LI +GT+E+K+Y+LQQ+KK ++D V+ + L L EQ I+ I Sbjct: 1002 KLITRGTIEEKIYKLQQEKKKMVDNVLGDKMFSEENVLLNLDEQKIKNIF 1051 >FN1160 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1089 Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust. Identities = 229/627 (36%), Positives = 352/627 (56%), Gaps = 35/627 (5%) Query: 499 FLYHTIPLLEPLLQVYATTAVKERLVTGM--YTPKASLTWNEKTDWLDFKFAMDGIPESE 556 F+ IPLL +Y + ++K T Y+ +T N +L+ F+ + + E Sbjct: 481 FIEDIIPLLHTYADIYLSQSIKNFNKTRKINYSVGVKVTSN----FLELDFSSTDLDKGE 536 Query: 557 IVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADIKSPEFSLPLVRGL 616 I+ VL + K+KYYRL G ++ ++ +L+ + + + + +D+K +P R Sbjct: 537 IIDVLNQYRAKKKYYRLKKGEIILMDQEQLEFLDDFIKDFNIKDSDLKKGNIKIPNFRAY 596 Query: 617 HMNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLRDYQQYGFQWMKTLA 676 +N K + + F +L E +P +LR+YQ G +WM L Sbjct: 597 QLNVLQNKYMD--IEKNQDFNKLF------EQKVIEIPSKYKKILREYQIVGVEWMLKLR 648 Query: 677 HYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPASLLYNWQNELKRFAPQ 736 GGILADDMGLGKTLQ I +L E +++ + LIV PASL+ NW+NE +F Sbjct: 649 AMNLGGILADDMGLGKTLQVITYL----ESVKRE-RACLIVTPASLILNWENEFNKFNSS 703 Query: 737 ISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFHTLILDEAQMIKNHA 796 + + G+ R + N +V+ITSY L+RD++LY F T+ILDEAQ IKNH Sbjct: 704 VLTLSIYGDRKNREVLLSNLKN-EVVITSYDYLKRDMDLYENIDFDTIILDEAQYIKNHK 762 Query: 797 TQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPG-LFPGKKAFHDLPR------ 849 T+ AQAVK + ++++ ALTGTP+EN+L ++WSI+ + G LF + + + Sbjct: 763 TKVAQAVKKINSKFKLALTGTPLENSLAEIWSIFDFLMNGYLFNYDYFYKNYEKAIVLQT 822 Query: 850 -----ETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKEAL 904 E + + PF+LRRLK DVLKELP+KIE ++ E+KKLY A L ++ + Sbjct: 823 EKRVTERLKNMVEPFILRRLKKDVLKELPEKIEETYYVDMNQEEKKLYQANLIKINETLA 882 Query: 905 KHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRSSGKRV 964 +++D + +I+VLA LT+LRQ+C P L + + S K +E+I + + +++ Sbjct: 883 QNIDVNT---NKIEVLAMLTKLRQICIDPRLLYEDVSSSSSKINACIELIEKSIENNQKI 939 Query: 965 LIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISLKAGGT 1024 L+FS FT +L ++++E L++P+F L G T KR E+ F LFLISLKAGGT Sbjct: 940 LLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRKEMVENFQNEAVPLFLISLKAGGT 999 Query: 1025 GLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQKK 1084 GLNLT A VI D WWN + + QA DRAHRIGQ+ VQV LI + T+E+K+ LQ KK Sbjct: 1000 GLNLTKASVVIHLDPWWNISAQNQATDRAHRIGQEDTVQVFNLITKNTIEEKILNLQSKK 1059 Query: 1085 KNLIDEVIEPGQEALSALSEQDIREIL 1111 K L D +E + + S+L+++ + ++ Sbjct: 1060 KELSDIFVENSKGSFSSLTKEQLLDLF 1086 >CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1166 Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust. Identities = 268/800 (33%), Positives = 414/800 (51%), Gaps = 84/800 (10%) Query: 376 SRTSGIDIAPGQMEPFMDKVIPGLKK---LGQVHIADSIADRIVQTQLQAXXXXXXXXXX 432 SR I I F + +P ++ + VH+ +S +++A Sbjct: 389 SRLRDIAIPEALFGSFRENALPVFQEYAEIANVHLLNSFVTLPYVDEVRAICDMSYLDGE 448 Query: 433 XXAGLEFQYGTIVINPLDEQARER-------GHEVILMRDGEAERRILELMAHESFARTE 485 A L F YG++ + P A + E IL R+ ER++LE E F Sbjct: 449 LEAKLHFLYGSLRV-PAASLALQYQDVRAFISDEGILARNLVEERKMLE----EVF---- 499 Query: 486 SGYIMSDEEGEY---------DFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTW 536 SG+I + +G + +F+ TIP + + + + + + S Sbjct: 500 SGFIYDERDGAFRVKSEKKIVEFMTETIPANQHRITFNCPENLSGQFIYDETIFELSFRE 559 Query: 537 NEKTDWLDFKFAMDGIPES-EIVLVLKSLQEKRKYYRLPDG------------------A 577 ++ + + G+ + + L+ + K+++ LP Sbjct: 560 GSDINYYEADLKVHGLLKGVPLDLLWDCISAKKRFLELPKAGQQSKGTRRGKVNSGKLPC 619 Query: 578 LLPLETAELQEIIALMNELGVHAAD---IKSPEFSLPLVRGLHMNAEAGKGGTDAVSIGR 634 +L L+ ++ ++ + NE+G D K P +SL G+ ++ + S+ Sbjct: 620 ILVLDLEKIAPVVQIFNEIGFKVLDDLVQKCPLWSLT---GISLDQ--FEALPVNFSMSE 674 Query: 635 SFRRLLANMHSPENLDF-PVPETLAPVLRDYQQYGFQWMKTLAHYRFGGILADDMGLGKT 693 + + DF VP+ + LR YQ G W++ L GILADDMGLGKT Sbjct: 675 RLIEIQKQIRGEIEFDFQDVPQQIQATLRSYQTEGVHWLERLRKMHLNGILADDMGLGKT 734 Query: 694 LQSI-AFLLSELEDIRQTGQPALIVAPASLLYNWQNELKRFAPQISAAIVDGNLAVRSKT 752 LQ+I A S+LE + +LIV P SL+YNW+ E ++F P+ ++DG + R K Sbjct: 735 LQAIIAVTQSKLE---KGSGCSLIVCPTSLVYNWKEEFRKFNPEFRTLVIDGVPSQRRKQ 791 Query: 753 VRNAAGCDVLITSYPLLRRDVELYVKRSFHTLILDEAQMIKNHATQTAQAVKALQARYRF 812 + A DV ITSY LL++DVELY F ++LDEA IKN T+ A++VK +Q+ +R Sbjct: 792 LTALADRDVAITSYNLLQKDVELYKSFRFDYVVLDEAHHIKNRTTRNAKSVKMIQSDHRL 851 Query: 813 ALTGTPVENALEDLWSIYGVVFPGL----------------FPGKKAFHDLPRETVAKRI 856 LTGTP+EN+LE+LWS++ + PGL + G KA + + + K++ Sbjct: 852 ILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRTGNYMGNKADNMV---ALKKKV 908 Query: 857 RPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKEALKHLDSDGFGKGR 916 PF+LRR+K DVLK+LP E L L QK+LY +Y A ++E + + +GF + Sbjct: 909 SPFILRRMKEDVLKDLPPVSEILYHCHLTESQKELYQSYAASAKQELSRLVKQEGFERIH 968 Query: 917 IKVLAGLTRLRQLCCHPALFVDGY--AGGSGKFEQLLEIIGECRSSGKRVLIFSQFTEML 974 I VLA LTRL+Q+CCHPA+F G S K++ L++++ SG + ++FSQ+T+ML Sbjct: 969 IHVLATLTRLKQICCHPAIFAKDAPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML 1028 Query: 975 GMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDL-FLISLKAGGTGLNLTGADT 1033 G+I ++L +P YLDG T + R++L +FNE L FLISLKAGGTGLNL GADT Sbjct: 1029 GIIKKDLESRGIPFVYLDGSTKN--RLDLVNQFNEDPSLLVFLISLKAGGTGLNLVGADT 1086 Query: 1034 VILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQKKKNLIDEVIE 1093 VI YD+WWNPAVE QA DR HRIGQ + V +L+ T+E+K+ LQ +KK+L+ +VI Sbjct: 1087 VIHYDMWWNPAVENQATDRVHRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVKKVIN 1146 Query: 1094 PGQEALSALSEQDIREILMI 1113 E +S L+ +++ E+L I Sbjct: 1147 SDDEVVSKLTWEEVLELLQI 1166 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 83,031,780 Number of extensions: 3582413 Number of successful extensions: 15596 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 15391 Number of HSP's successfully gapped: 65 Length of query: 1113 Length of database: 38,378,431 Length adjustment: 117 Effective length of query: 996 Effective length of database: 24,884,353 Effective search space: 24784815588 Effective search space used: 24784815588 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)