BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0024.p
         (150 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_pksA [K] COG1309 Transcriptional regulator                         163   8e-41
DR1003 [K] COG1309 Transcriptional regulator                           49   3e-06

>BS_pksA [K] COG1309 Transcriptional regulator
          Length = 205

 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 111/148 (75%)

Query: 1   LRHYFSTQHELLAFAMNLVKDRAQARIDTVLQLDLPPKEQVTRVLMELIPLDDSTMAEME 60
           LRHYFSTQ ELLAFAM LV+++   RI  +   DL PKE+V ++L+E++P ++ T+ EME
Sbjct: 46  LRHYFSTQDELLAFAMKLVQEKVTDRIKDIAVRDLLPKEKVLQILLEMVPTNEETIREME 105

Query: 61  VWFAFVFHLKYTDEEYDGLNDNIYLGIYKMVEFLDEQGILKEDLDRDVEAERLYALVDGL 120
           VWFAF  + ++  + +D  +D I+ G+  ++ +LDE  +LK++ D+D+EAERLYALVDGL
Sbjct: 106 VWFAFTAYARHKKDMFDASHDGIFSGMRNLIAYLDESDLLKQNADKDIEAERLYALVDGL 165

Query: 121 ALHAMLEPERLDKQRIIRVLTGHLDSIS 148
           ALHAML+P R++K RI RV+  H++SI 
Sbjct: 166 ALHAMLDPVRVNKDRIKRVIMQHVESIC 193


>DR1003 [K] COG1309 Transcriptional regulator
          Length = 199

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 1   LRHYFSTQHELLAFAMNLVKDRAQARIDTVLQLDLPPKEQVTRVLMELIPLDDSTMAEME 60
           +RHY  T+  +L FA   +   A  R    LQL  PP+ Q+   L+ L+PLD  +    E
Sbjct: 46  VRHYLPTRDSILTFAAEQLAG-AVERELRALQLSGPPRAQLEGFLLALLPLDGPSQEWTE 104

Query: 61  VWFAFVFHLKYTDEEYDG---LNDNIYLGIYKMVEFLDEQGILKEDLDRDVEAERLYALV 117
           VW AF       ++  D    L  +++  + ++   L    +LK         E L+AL+
Sbjct: 105 VWLAFASAAVRGEQYADAHGILYRDLHATLLEITRSLAGADLLKAATPEQAAVE-LHALI 163

Query: 118 DG 119
           DG
Sbjct: 164 DG 165


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,867,507
Number of extensions: 468262
Number of successful extensions: 846
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 845
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 53
Effective length of database: 27,191,033
Effective search space: 1441124749
Effective search space used: 1441124749
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)