BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0017.p
         (251 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP0739 [K] COG0789 Predicted transcriptional regulators                95   9e-20
BS_mta [K] COG0789 Predicted transcriptional regulators                95   1e-19
BH0408 [K] COG0789 Predicted transcriptional regulators                92   6e-19
lin0530 [K] COG0789 Predicted transcriptional regulators               83   3e-16
DR1628 [K] COG0789 Predicted transcriptional regulators                79   8e-15

>SP0739 [K] COG0789 Predicted transcriptional regulators
          Length = 246

 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 2   LYTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDFT 61
           +Y +KE A LSG +VKTLHHY K GLLVP + SE GYR Y   +LERLQ I+ YK L F+
Sbjct: 1   MYHIKEAAQLSGVSVKTLHHYDKIGLLVPLK-SENGYRTYSQEDLERLQVILYYKYLGFS 59

Query: 62  LEQIGQLLKEE-PDRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFK 120
           LE+I +LLKEE  D L  L             +D +I TL+K++  ++    M   E F 
Sbjct: 60  LEKIAELLKEERTDLLPHLTRQLDYLTRERQHLDTLISTLQKTIQEQKGERKMTIEEKFT 119

Query: 121 GLASEQEWK 129
           G + +   K
Sbjct: 120 GFSYQDNQK 128


>BS_mta [K] COG0789 Predicted transcriptional regulators
          Length = 257

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 3/123 (2%)

Query: 3   YTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDFTL 62
           Y VK+VA +SG +++TLHHY    LL P+ +++AGYRLY  A+LERLQQI+ +KE+ F L
Sbjct: 3   YQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRL 62

Query: 63  EQIGQLLKEEP--DRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFK 120
           ++I ++L + P  DR + L             +D +I+T+ +++ S + GE M   ++F 
Sbjct: 63  DEIKEML-DHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLSVDGGETMNKRDLFA 121

Query: 121 GLA 123
           GL+
Sbjct: 122 GLS 124


>BH0408 [K] COG0789 Predicted transcriptional regulators
          Length = 255

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 5   VKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDFTLEQ 64
           VKEVA L GT+V+TLHHY + GLL+P E +EAGYRLY    LE LQQI+ +KEL F+L+Q
Sbjct: 5   VKEVAELVGTSVRTLHHYDEIGLLIPDETTEAGYRLYSDDNLEMLQQILFFKELGFSLKQ 64

Query: 65  IGQLLKEEP-DRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFKGL 122
           I +++     DRL  L             ID ++ET+ K++   +    M + E F G 
Sbjct: 65  IKEIVYSPTFDRLEALSLHRNMLLEKRSRIDQMVETIDKTIKHLKGEIHMTNEEKFAGF 123


>lin0530 [K] COG0789 Predicted transcriptional regulators
          Length = 246

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 5/121 (4%)

Query: 5   VKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDFTLEQ 64
            KE+A L+G +V+TLHHY K GLLVP +    GYR+Y   ++++LQQI+ +KELDF L++
Sbjct: 3   TKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKK 62

Query: 65  IGQLLKEEP--DRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGE-PMKDTEMFKG 121
           I Q+L ++P  D+   L             I+ ++ETL +++ + E+GE  M + E F G
Sbjct: 63  IKQIL-DDPSFDKEVALSLQRHLLIEKKTRIEAMLETLDQTIKN-EKGEIIMTNEEKFTG 120

Query: 122 L 122
            
Sbjct: 121 F 121


>DR1628 [K] COG0789 Predicted transcriptional regulators
          Length = 185

 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 51/72 (70%)

Query: 3  YTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDFTL 62
          +TV EVA L+  +V+TLHHY   GLL P+  SEAGYRLY  A++ RL +I+ ++EL F+L
Sbjct: 13 WTVGEVAELTRVSVRTLHHYDAVGLLSPSARSEAGYRLYTPADVARLWRILTFRELGFSL 72

Query: 63 EQIGQLLKEEPD 74
            IG+LL   P+
Sbjct: 73 ADIGKLLGSSPE 84


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,258,954
Number of extensions: 553549
Number of successful extensions: 1106
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 19
Length of query: 251
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 147
Effective length of database: 26,383,695
Effective search space: 3878403165
Effective search space used: 3878403165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)