BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0012.p
         (147 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0983 [KT] COG3279 Response regulator of the LytR/AlgR family       102   1e-22
SP1915 [KT] COG3279 Response regulator of the LytR/AlgR family         52   3e-07
CC0295_2 [KT] COG3279 Response regulator of the LytR/AlgR family       51   5e-07
SA2153 [KT] COG3279 Response regulator of the LytR/AlgR family         47   8e-06

>lin0983 [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 151

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 79/123 (64%), Gaps = 2/123 (1%)

Query: 25  EAVLKLLYSIQAMAASRKLIGMTDLQMHIIDPDEVYYFEAVDHKVFIYCAEKVYESRLKL 84
           E V K++  ++    + K+    D   +++   ++ YFEAV+ K+F+Y  + VYE+  KL
Sbjct: 26  EEVTKIVMGLEEQ--TEKISVKKDGVTYLLAKRKILYFEAVESKIFVYTEKDVYETTWKL 83

Query: 85  YEIEQAYAHRDFFRASKSTVLNIAKIKSVSPLLYGRFEALLHNGEKVIISRQYVPVLRQK 144
           YE+E+ +    FFR SKS +LNI  I+ ++P  +G+FEA L N EKVIISRQY  +L+QK
Sbjct: 84  YELEEKFKDSSFFRCSKSMILNIEWIEKIAPGFHGKFEASLFNREKVIISRQYAKILKQK 143

Query: 145 LGL 147
           L L
Sbjct: 144 LNL 146


>SP1915 [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 149

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 54  IDPDEVYYFEAVDHKVFIYCAEKVYESRLKLYEIEQAYAHRDFFRASKSTVLNIAKIKSV 113
           +D  E+ +FE    K++ +  ++ YE RLKLYE+E     R F R SKST+ NI +I SV
Sbjct: 54  LDLSEILFFETEGSKIYAHNQKEAYEVRLKLYELESILP-RYFNRVSKSTIANIRQIYSV 112

Query: 114 SPLLYGRFEALLHNGEK-VIISRQYVPVLRQKL 145
                G      +   K V +SR Y  +L++ L
Sbjct: 113 DKSFSGTGTISFYQTHKEVHVSRHYQSLLKENL 145


>CC0295_2 [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%)

Query: 42  KLIGMTDLQMHIIDPDEVYYFEAVDHKVFIYCAEKVYESRLKLYEIEQAYAHRDFFRASK 101
           +L+ M   +   +D   V +F A D+ V ++   +    R  L  +E     R F RA +
Sbjct: 18  RLMVMAGARRVPVDITAVEWFGAADNYVVVHWDGREGLMRATLQSLEARLDPRLFARAHR 77

Query: 102 STVLNIAKIKSVSPLLYGRFEALLHNGEKVIISRQYVPVLRQKLG 146
           S ++N++K+    PL  G +   L +G +V+ SR Y   L ++LG
Sbjct: 78  SALVNLSKVSQAQPLSDGSWRLTLASGAEVVTSRTYRDALLKRLG 122


>SA2153 [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 147

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 24  DEAVLKLLYSIQAMAASRKLIGMTDLQMHIIDPDEVYYFEAVDHKVFIYCAEKVYESRLK 83
           ++ V  ++ ++  +  S  L+G  D ++HII+  +V  F+ ++  V    + + ++ +L+
Sbjct: 25  NDHVQSIINAVNDLDKSHTLVGYIDKEIHIINVSDVITFQVINKNVTAITSNQKFKLKLR 84

Query: 84  LYEIEQAYAHRDFFRASKSTVLNIAKIKSVSPLLYGRFEALLHNGEKVIISRQYVPVLRQ 143
           LYE+E+    + F R SKS ++N   I+ +     G     L +      SR+Y+  +++
Sbjct: 85  LYELEKQLP-QHFIRISKSEIVNKYYIEKLLLEPNGLIRMYLKDAHYTYSSRRYLKSIKE 143

Query: 144 KLGL 147
           +L +
Sbjct: 144 RLSI 147


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,767,439
Number of extensions: 327001
Number of successful extensions: 661
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 5
Length of query: 147
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 51
Effective length of database: 27,306,367
Effective search space: 1392624717
Effective search space used: 1392624717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)