BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0027.p
         (210 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0264 [K] COG5662 Predicted transmembrane transcriptional regul...   120   2e-27

>BH0264 [K] COG5662 Predicted transmembrane transcriptional regulator
           (anti-sigma factor)
          Length = 213

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 3/195 (1%)

Query: 14  SMMHDYLDDDLPELQQRELKEHLLSCTDCRAKFKELEQTDMLMFSLMHQNPVASEDLVGR 73
           +++  Y+D +    +++EL EHL +C  C     E+ +    + S  H    A E     
Sbjct: 9   TLIDKYIDGEATAEERQELNEHLETCDACFEYMLEVRKVVAFVQSASHVQ--APEGFTEN 66

Query: 74  IMNSLPHVKKERAFITWIKRHPALTAASVFILVMLMSSVTFWNQD-RQLVVRGSDLEQVV 132
           +M +LP  K+   F  W++R+P   AA+VF+L+M  S  + W+ D   + V G+    + 
Sbjct: 67  VMKNLPKRKQTNRFKVWMRRYPLAVAAAVFVLLMSTSLFSMWSSDGEHVTVTGTGNVSID 126

Query: 133 IKGDTVIVPSGKTISGDLTVENGKTQVYGEVNGNVTVIDGSLYQASTAHISGQVKSIDQA 192
            +   VIVP G+ I GDL V NG+  + GEV GNV +++ S Y AS   +SG++  ++Q 
Sbjct: 127 QESGRVIVPEGEVIQGDLVVRNGELIIEGEVQGNVLLVNSSQYLASPGSVSGEIDEVNQI 186

Query: 193 VSWLWYKVTNMFSEV 207
           + W+WY      ++V
Sbjct: 187 LDWIWYHTKKFLTKV 201


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,791,340
Number of extensions: 558681
Number of successful extensions: 1703
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1701
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 108
Effective length of database: 26,614,363
Effective search space: 2874351204
Effective search space used: 2874351204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)