BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0026.p
         (270 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ybbP [S] COG1624 Uncharacterized conserved protein                 248   5e-66
BS_yojJ [S] COG1624 Uncharacterized conserved protein                  78   2e-14

>BS_ybbP [S] COG1624 Uncharacterized conserved protein
          Length = 804

 Score =  248 bits (634), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 18/244 (7%), Positives = 45/244 (18%), Gaps = 3/244 (1%)

Query: 26  MVRGTRAVQLLKGILVLVVIWALSTLLDLYTLKWLMNQXXXXXXXXXXXXXQPELRRGLE 85
            +                   A    L                                 
Sbjct: 31  ALGNISDRMEKGLSQQSREFMAGDRALRSSREVPQAWLEEAQKRGLKVGKQLTFATMTFA 90

Query: 86  QLGRGKFFGRAAENDEEIS-KLIGEVIKAVNYLAQRKIGALIVFERATGLNEYTESGIPM 144
                    +A ++   +   L               +   ++        +  + G   
Sbjct: 91  GDTPQLANVKAVDDIYPMYGDLQTNPPGLKPQAGSVLLAPRLMALLNLKTGDTIDVGDAT 150

Query: 145 RSVVSSELLINIFIPNTPLHDGALIMQEGQIAAAACYLPLSENPFISKELGTRHRAAIGI 204
             +    +       N       L+M    +       P S   +  K  G  ++     
Sbjct: 151 LRIAGEVIQEPDSGFNPFQMAPRLMMNLADVDKTGAVQPGSRVTWRYKFGGNENQLDGYE 210

Query: 205 XXXXXXXXXXXXXXTGQISLAINGQIVRDIKEESLISKLYEELRATSSLKEKSSAFWKRK 264
                           +      G+ +   ++  L+S L   L A +      +     +
Sbjct: 211 KWLLPQLKPEQRWYGLEQDEGALGRSMERSQQFLLLSALLTLLLAVA--AVAVAMNHYCR 268

Query: 265 GDKN 268
              +
Sbjct: 269 SRYD 272


>BS_yojJ [S] COG1624 Uncharacterized conserved protein
          Length = 201

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 101 EEISKLIGEVIKAVNYLAQRKIGALIVFERATGLNEYTESGIPMRSVVSSELLINIFIPN 160
           EE +    E+ KA+  L++ K GALIV ERA  +  + + G  + + +SS L+ +IF P 
Sbjct: 71  EEFTPAFIELAKAIKALSEHKHGALIVIERADPVERFIQKGTSLHAEISSSLIESIFFPG 130

Query: 161 TPLHDGALIMQEGQIAAAACYLPLSENPFISKELGTRH 198
            PLHDGAL+++E ++ +A+  LPL+    +   LGTRH
Sbjct: 131 NPLHDGALLVRENKLVSASNVLPLTTKE-VDIHLGTRH 167


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,056,418
Number of extensions: 493800
Number of successful extensions: 916
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 165
Effective length of database: 26,268,361
Effective search space: 4334279565
Effective search space used: 4334279565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)