BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0018.p
         (85 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl429 [V] COG0842 ABC-type multidrug transport system, permease...   103   5e-23

>AGl429 [V] COG0842 ABC-type multidrug transport system, permease
          component
          Length = 200

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 7/76 (9%), Positives = 12/76 (15%), Gaps = 1/76 (1%)

Query: 8  PYVGMWVTADDYIRHELLTNGRYDEARGNRKSAYTGSYTITGNHIDYVDDTGFTADGEFR 67
          PY    +  D             +E    R        T      +  +           
Sbjct: 4  PYFLCKLNDDIGRFLVADKYRLPEEFFTTRFLVRRIVPTDAEAIFEGWNTDPEVTKYLTW 63

Query: 68 DG-ILYHAGMILFRES 82
                        E+
Sbjct: 64 KPHSELGQTQRAIEEN 79


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,725,214
Number of extensions: 303830
Number of successful extensions: 391
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 1
Length of query: 85
Length of database: 38,378,431
Length adjustment: 55
Effective length of query: 30
Effective length of database: 32,035,061
Effective search space: 961051830
Effective search space used: 961051830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)