BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0014.p
         (444 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB1185 [M] COG2843 Putative enzyme of poly-gamma-glutamate bios...    52   2e-06
NMB1147 [M] COG2843 Putative enzyme of poly-gamma-glutamate bios...    52   2e-06

>NMB1185 [M] COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis
           (capsule formation)
          Length = 252

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 7/93 (7%), Positives = 19/93 (20%), Gaps = 10/93 (10%)

Query: 231 QDQQEIFRTIRDARERSDFVFVSLHT-HEG--------ENENWYSDYPAEFIETFARGAV 281
                    +   R  +  +     +            + +   +D         A   +
Sbjct: 39  GCGPGNSTALLQQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPV-QALDLI 97

Query: 282 DAGASCVFGHGAHFTRGVELYQGQPIFYNLGSL 314
            A AS  +    +      +    P       +
Sbjct: 98  FANASLQWLPDHYELFPHLVSLLNPQGVLAVQM 130


>NMB1147 [M] COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis
           (capsule formation)
          Length = 252

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 7/93 (7%), Positives = 19/93 (20%), Gaps = 10/93 (10%)

Query: 231 QDQQEIFRTIRDARERSDFVFVSLHT-HEG--------ENENWYSDYPAEFIETFARGAV 281
                    +   R  +  +     +            + +   +D         A   +
Sbjct: 39  GCGPGNSTALLQQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPV-QALDLI 97

Query: 282 DAGASCVFGHGAHFTRGVELYQGQPIFYNLGSL 314
            A AS  +    +      +    P       +
Sbjct: 98  FANASLQWLPDHYELFPHLVSLLNPQGVLAVQM 130


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 33,750,358
Number of extensions: 1503374
Number of successful extensions: 12577
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12577
Number of HSP's successfully gapped: 2
Length of query: 444
Length of database: 38,378,431
Length adjustment: 110
Effective length of query: 334
Effective length of database: 25,691,691
Effective search space: 8581024794
Effective search space used: 8581024794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)