BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0013.p (252 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L163056 [E] COG0765 ABC-type amino acid transport system, permea... 282 4e-76 SPy1658 [E] COG0765 ABC-type amino acid transport system, permea... 272 4e-73 CAC0878 [E] COG0765 ABC-type amino acid transport system, permea... 174 2e-43 BS_ytmL [E] COG0765 ABC-type amino acid transport system, permea... 169 3e-42 lin2442 [E] COG0765 ABC-type amino acid transport system, permea... 167 2e-41 >L163056 [E] COG0765 ABC-type amino acid transport system, permease component Length = 295 Score = 282 bits (721), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 143/240 (59%), Positives = 188/240 (78%) Query: 3 KIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVFIS 62 KIF +A + +++++P SL++T+I+M+ GL+ LI A++R+ KIP+L+QL +F+S Sbjct: 44 KIFSWSAFVDAFLPIIKMIPSSLEMTIIAMVFGLLLGLILALVRINKIPILNQLRALFVS 103 Query: 63 FIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSETI 122 FIRGTPI+VQLYL+Y GIPL+LK IN YGT++N+N +PAMLFV+V FA NE AYNSETI Sbjct: 104 FIRGTPILVQLYLSYTGIPLILKAINMNYGTNFNVNTIPAMLFVIVAFALNEGAYNSETI 163 Query: 123 RAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFVAG 182 RAA+QSV+KGQIEAA+SLGMT QV RV +PEA VA PLGNALIGLLK TSLAFVAG Sbjct: 164 RAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAG 223 Query: 183 VIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFSIPDPVGQKVNRG 242 V+EMTA+ +II GS FR FE YLALA++YW + II E ++R LE++ + P ++ NR Sbjct: 224 VVEMTARAQIIGGSTFRLFETYLALALVYWPICIIFELLIRGLERKLDVRMPNDKRKNRA 283 >SPy1658 [E] COG0765 ABC-type amino acid transport system, permease component Length = 267 Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 129/233 (55%), Positives = 184/233 (78%) Query: 2 GKIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVFI 61 GK+F +AVF +IP +++ LP++L +T+ GLV ALIFA++++ K+ +L + +F+ Sbjct: 23 GKLFSWHAVFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAIFV 82 Query: 62 SFIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSET 121 SF+RGTPI+VQL LTY GIPL LKF+NQ+YG D+N+NA+PA +F + FAFNEAAY SET Sbjct: 83 SFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASET 142 Query: 122 IRAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFVA 181 IRAA+ SV+ G+IEAA+SLGMT +QV RRVI+P A VVAIP L N LIGL KGTSLAF A Sbjct: 143 IRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNA 202 Query: 182 GVIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFSIPDP 234 G++EM A+ +I+ GS++R+FE Y+++A++YW ++I++EQ+ R +E + +I P Sbjct: 203 GIVEMFAQAQILGGSDYRYFERYISVALVYWSISILMEQVGRLIENKMAIKAP 255 >CAC0878 [E] COG0765 ABC-type amino acid transport system, permease component Length = 221 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 145/226 (64%), Gaps = 10/226 (4%) Query: 5 FDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVFISFI 64 F + S P LL+ + ++ + VIS I+GLV A I A I+M KI LSQ++ V+ISF Sbjct: 3 FSVGYFLNSFPDLLKYIHYTIFMAVISTIIGLVIATILAPIKMLKIKGLSQVIGVYISFF 62 Query: 65 RGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSETIRA 124 RGTP++VQL++ Y G+P L+K + N+ + AM+ L + +AY +E IR Sbjct: 63 RGTPLLVQLFVFYYGLPQLIKPLK-------NVTPLEAMILGL---SLCGSAYMAEIIRG 112 Query: 125 ALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFVAGVI 184 A++SV KGQ+EAA S+GMT Q R+I P+A+ VAIP +GN + LLK +SLAFV G+ Sbjct: 113 AIESVEKGQMEAALSVGMTKFQAFTRIIYPQAIRVAIPGIGNQFVDLLKSSSLAFVLGLT 172 Query: 185 EMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFS 230 E+ A+ ++ + S+F+ E YL+LAIIYWV I + R +EKR S Sbjct: 173 EILARAQMNAASSFKVMESYLSLAIIYWVTVEIFNFLQRIIEKRIS 218 >BS_ytmL [E] COG0765 ABC-type amino acid transport system, permease component Length = 239 Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 143/228 (62%), Gaps = 6/228 (2%) Query: 1 MGKIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVF 60 M K FD+N + +P L LPV+L I +S++ G V L A+ R+ IP+++QL V+ Sbjct: 1 MEKAFDMNMIGDFVPTLTAYLPVTLYILTLSLLFGFVLGLFLALPRIYNIPIVNQLAKVY 60 Query: 61 ISFIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSE 120 ISF RGTPI+VQL++ + GIP L I G D + + + T+A + AA +E Sbjct: 61 ISFFRGTPIMVQLFIVFYGIPALTGLI----GID--TSKMDPFYAAVATYALSNAAAAAE 114 Query: 121 TIRAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFV 180 IRA + SV+KGQ EAA S+G++ Q RR+++P+ALV A P +GN +I LK TSLAF Sbjct: 115 IIRAGVGSVDKGQTEAAYSIGLSGSQAFRRIVLPQALVQAFPNMGNMVISSLKDTSLAFS 174 Query: 181 AGVIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKR 228 GV++M+ +G+ + S+ EVY+AL+I+Y+ + ++ E R EKR Sbjct: 175 IGVMDMSGRGQTLITSSNHSLEVYIALSIVYYAVAVLFEWFFRVAEKR 222 >lin2442 [E] COG0765 ABC-type amino acid transport system, permease component Length = 238 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 145/228 (63%), Gaps = 6/228 (2%) Query: 1 MGKIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVF 60 M K FD+ + IP L LP++L I +S+I G + +I ++ R+ +IPVL+Q V+ Sbjct: 1 MDKAFDVKMIADFIPTLAGYLPITLYILALSLIFGFILGVILSLPRIYQIPVLNQFARVY 60 Query: 61 ISFIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSE 120 ISF RGTPI+VQL++ + GIP L + +G D ++ + + + T+A + AA +E Sbjct: 61 ISFFRGTPIMVQLFIVFYGIPAL----SGVFGID--LSQMDPLYAAIATYALSSAATIAE 114 Query: 121 TIRAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFV 180 IRA + SV+ GQ EAA S+G+ Q R+I+P+AL A+P GN +IG LK TSLAF Sbjct: 115 VIRAGVNSVDAGQAEAAYSVGLNGRQTFLRIILPQALYQALPNFGNLVIGYLKDTSLAFS 174 Query: 181 AGVIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKR 228 GV++M+ +G+ + + EVY++L+IIY++ +++E +++EKR Sbjct: 175 IGVMDMSGRGQTLITLSNHALEVYISLSIIYYITAVLLEYSFKWIEKR 222 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.144 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,753,445 Number of extensions: 604504 Number of successful extensions: 3011 Number of sequences better than 1.0e-05: 205 Number of HSP's gapped: 2816 Number of HSP's successfully gapped: 205 Length of query: 252 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 148 Effective length of database: 26,383,695 Effective search space: 3904786860 Effective search space used: 3904786860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 114 (48.5 bits)