BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0012.p (257 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1460 [E] COG1126 ABC-type polar amino acid transport system, A... 338 5e-93 SPy1657 [E] COG1126 ABC-type polar amino acid transport system, ... 332 3e-91 L164012 [E] COG1126 ABC-type polar amino acid transport system, ... 332 3e-91 CAC0879 [E] COG1126 ABC-type polar amino acid transport system, ... 270 1e-72 lin2440 [E] COG1126 ABC-type polar amino acid transport system, ... 258 7e-69 >SP1460 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 247 Score = 338 bits (867), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 205/245 (83%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI++S+LSKSF G +LD + ++I+KG+VVALIGSSGAGKSTFLR+LN LE D G + + Sbjct: 1 MIKISNLSKSFSGQTVLDHLDLDIQKGEVVALIGSSGAGKSTFLRSLNYLETPDSGSIQI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 +GF +DFS IT ++ L LR++ +MVFQ FNLF+ RTALDNVKEGL +VKK++D+EA++IA Sbjct: 61 DGFSVDFSKITQEEILALRRKLSMVFQQFNLFERRTALDNVKEGLVVVKKLSDQEATKIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 KE+L +VGLS+R ++YP+HLSGGQ+QRV +ARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 KEELAKVGLSDRENHYPRHLSGGQKQRVALARALAMKPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A +GQTMILVSH+MSFV +VA+K+LFLDKGKI+E GTPDE+ + PK R KEF Sbjct: 181 SIADAAKSGQTMILVSHDMSFVAQVADKILFLDKGKIIESGTPDEIIHTPKEERTKEFFA 240 Query: 248 NYFRN 252 +Y R Sbjct: 241 SYKRT 245 >SPy1657 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 247 Score = 332 bits (852), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 152/242 (62%), Positives = 204/242 (84%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI + +LSK+F G +LD ++++IEKG V+AL+G+SGAGKSTFLR+LN LEK D G + + Sbjct: 1 MITIRNLSKTFSGQKVLDSLALDIEKGQVIALVGASGAGKSTFLRSLNYLEKPDSGSISI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 F +DF TIT +Q L LR++ AMVFQ FNLF+ RTAL+NVKEGLK+VKK++D+EA+++A Sbjct: 61 GDFTVDFETITTEQVLILRRKLAMVFQQFNLFERRTALENVKEGLKVVKKLSDQEATKLA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 + +L +VGL++R H+YP+HLSGGQ+QRV +ARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 QAELAKVGLADRKHHYPRHLSGGQKQRVALARALAMKPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A +GQTM+LVSH+M+FVY+VA++VLFLD+GKI+E+GTP+EVF HP+ R KEF Sbjct: 181 SITDAAKSGQTMVLVSHDMNFVYQVADRVLFLDQGKILEQGTPEEVFRHPQKERTKEFFA 240 Query: 248 NY 249 +Y Sbjct: 241 SY 242 >L164012 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 64 Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 0/249 (0%), Positives = 0/249 (0%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 M + F G + ++ S + AL K G + Sbjct: 1 MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 Sbjct: 61 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 Sbjct: 121 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 Sbjct: 181 240 Query: 248 NYFRNKSSN 256 Sbjct: 241 249 >CAC0879 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 243 Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 180/240 (75%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI++ L K++ N +L IS+EI+ G++VA+IG SG GKSTFLR LN LE+ D G L + Sbjct: 1 MIKIESLHKTYGDNEVLKGISLEIKAGEIVAVIGPSGTGKSTFLRCLNYLERPDSGTLLI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 ++DF I+ + LRK+T+MVFQ++NLF+++TAL+NV E L++VKKM EA +++ Sbjct: 61 GDVRVDFENISKDEVYSLRKKTSMVFQNYNLFKNKTALENVMEALRVVKKMPKDEAEKVS 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 E L+QVGL ++A+ YP LSGGQQQR+GIARA+ +KP+++L DEPTSALDPE VGEVL Sbjct: 121 LEALKQVGLLDKANSYPSRLSGGQQQRIGIARAMVLKPEIILFDEPTSALDPEWVGEVLD 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 IK A+ TMI+V+HEMSF E+A+K++FLD GKI++ GTP+EVF + R +F++ Sbjct: 181 VIKGIASRHLTMIIVTHEMSFAREIADKIVFLDGGKIIQYGTPEEVFEKSNNDRVNQFIK 240 >lin2440 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 64 Score = 258 bits (659), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 0/239 (0%), Positives = 0/239 (0%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 M + F G + ++ S + AL K G + Sbjct: 1 MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 Sbjct: 61 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 Sbjct: 121 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFL 246 Sbjct: 181 239 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,944,259 Number of extensions: 743380 Number of successful extensions: 20220 Number of sequences better than 1.0e-05: 2202 Number of HSP's gapped: 16210 Number of HSP's successfully gapped: 2511 Length of query: 257 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 153 Effective length of database: 26,383,695 Effective search space: 4036705335 Effective search space used: 4036705335 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)