BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0010.p (323 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1925 [G] COG1175 ABC-type sugar transport systems, permease co... 113 3e-25 BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 113 4e-25 YPO0613 [G] COG1175 ABC-type sugar transport systems, permease c... 111 2e-24 BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 106 6e-23 BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 104 2e-22 >BH1925 [G] COG1175 ABC-type sugar transport systems, permease components Length = 305 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 152/281 (54%), Gaps = 11/281 (3%) Query: 12 GYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFKDLLFDNVSFR 71 Y F PF + F +F L+P++++ + F GL P L N FQ L+F++ +F Sbjct: 20 AYAFISPFFILFAVFGLFPMIFSFYLSFFRWDGLNPMSYVGLAN-FQ----LIFNDPTFF 74 Query: 72 KSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPNIITAGTIAVLF 131 ++ NT ++ I+ +PQI++ +LL A+ N L I+ Q F+ L+++P I + +A++F Sbjct: 75 SAIKNTFIIGILGTLPQIIVGILL-AFALNSAL-IRFQHTFRTLVFLPYITSIVAVAIIF 132 Query: 132 SSLFA-YPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGNTMIVLVAGVM 190 +F P G N + + + P+ + Q+ + +A + FW W G I+ +AG+ Sbjct: 133 GLVFNNQPFGLANYVLSLF--NIDPVRWSQEYWPVKIAIATMVFWRWVGYNTIIFLAGMQ 190 Query: 191 GINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDIPQLFLAGGPD 250 I L+E+A IDGA Q IT+P L+ +LF + T+ +G L +F P +FL G Sbjct: 191 SIPKELYEAAKIDGATIGQQIRLITVPMLKPFILFVVFTATIGSLQLFTEPLIFLGRGLR 250 Query: 251 DSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGL 291 + +T +++ AF + + A+AA++++F I L+ + Sbjct: 251 EEGITMVAYLWRDAFVLN-AFGTASAAAIVLFFIIITLTAI 290 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 144/300 (48%), Gaps = 16/300 (5%) Query: 2 RRKGVNYSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFK 61 RK S GY P++L F + P++ + FT+ L L QN+ Sbjct: 22 ERKKWKESFVGYAMISPWLLGFFGLVIGPMIASLYFSFTDYDMLSSANWVGL----QNYI 77 Query: 62 DLLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPNI 121 + + F +SL T + V ++ AL L F R KG G F + Y+P+I Sbjct: 78 HIFTSDPRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGR---KGSGLFSTIYYIPSI 134 Query: 122 ITAG-TIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGN 180 I +AV++ LF G VNS E+ G+S + ++ A I+ + W +G+ Sbjct: 135 IGGSVAVAVVWKQLFG-SRGAVNSFLELFGFSG--VNWIGSTDYALSILILLVVWQ-FGS 190 Query: 181 TMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDI 240 MI+ +AG+ I L+E+A++DGAN F+ FF ITLP L ++ F LI +GG F Sbjct: 191 PMIIFLAGLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQTIGGFMTFTQ 250 Query: 241 PQLFLAGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGLVFYLMRDRD 300 L GGP DSTL ++++Y AF+ Y R AS + +++ I+ G+ F + Sbjct: 251 AYLITGGGPLDSTLFYAVYLYEVAFE----YLRMGYASAMAWILLVIIGGITFVFFKSSS 306 >YPO0613 [G] COG1175 ABC-type sugar transport systems, permease components Length = 293 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 155/292 (53%), Gaps = 20/292 (6%) Query: 1 MRRKGVNYSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHI--LDNPFQ 58 M+ K V GY+F P+++ FL+F LYP + F ++ L P+ L+N Sbjct: 1 MKNKNV---MMGYLFIAPWIIYFLVFILYPFFLSFQNSFLDINVLSPESTQFVGLNNWIS 57 Query: 59 NFKDLLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYM 118 D LF S + N + +++F+ + +ALLL + G G F+ ++++ Sbjct: 58 VSSDELFWR-SLFNVIFNQVIFVLLSFVLAMGMALLL------HEITHFG-GLFRTIMFI 109 Query: 119 PNIITAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWY 178 P +IT+ T+A++ + + P GPV S+ G DAP+F+ ++ ++A W W+ Sbjct: 110 P-VITSITVAMIIFNFLSSPAGPVQSLLLEWGVLDAPVFWKFERWLPMPLIAVFSTWKWF 168 Query: 179 GNTMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMF 238 G MI+ + G+ GI+ +L+E+A IDGA+ + + ITLP L+ ++F + +++ G+ MF Sbjct: 169 GIQMIIFLGGIAGISKSLYEAADIDGASWRRKTWSITLPLLKPQIIFVMTMNIINGMQMF 228 Query: 239 -DIPQLF-LAGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAIL 288 ++ F L GGP ++ LT +++Y F M AS I ++AA++ Sbjct: 229 IEVLMNFDLHGGPYNAALTPVLYLYKTGFSDMKM----GTASTIGLLLAAVI 276 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 137/283 (48%), Gaps = 7/283 (2%) Query: 6 VNYSKF-GYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFKDLL 64 VN +K Y+F +P L FL+F PI + P+ I +N+ +L Sbjct: 2 VNQNKIIPYLFLVP-ALVFLLFVYIPIFENVFLSLFQWSSFSPEKTFI---GLKNYVELF 57 Query: 65 FDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPNIITA 124 D V F ++L N L +++ + Q+ L+L A +K + K F+ + ++P +I+ Sbjct: 58 HDPV-FYQALTNNVLYAVISIVCQVFGGLILAAVLEDKLVR-KWSPFFRTVFFLPVVISM 115 Query: 125 GTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGNTMIV 184 IA+LF ++ G +N + + +G +L D +TA V F+ W G ++ Sbjct: 116 TVIALLFDFIYNPETGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAML 175 Query: 185 LVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDIPQLF 244 + + I L+E+A +DGA Q FF IT+P + + ++ ++ G T+F+ P + Sbjct: 176 YIVSIQKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYIL 235 Query: 245 LAGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAI 287 GGP ++ S F+Y AF M +A A++++ + A+ Sbjct: 236 TGGGPGKASEVLSTFLYKSAFTKDMMGYASAIATVVLIITLAL 278 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 134/266 (50%), Gaps = 11/266 (4%) Query: 2 RRKGVNYSKF-GYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNF 60 +++ +N F GY+F P ++ F IF+L P+LY+ + FT+ L +PV + N+ Sbjct: 19 QKRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFD-LYNEPVWTGAD---NY 74 Query: 61 KDLLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPN 120 L + FRK++ NT + IP + L A N++ +KG F+ ++P Sbjct: 75 YRLFVTDDLFRKTVFNT--FYAALGIPIGMAVSLGIAVALNQK--VKGIALFRTAFFLPA 130 Query: 121 IITAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGN 180 + + I +L+ +F G +N + +G +L D+ A + W G Sbjct: 131 VSSVVAITLLWRWIFNADFGLLNIMLNYVGIHGPG--WLSDEKWAMPAMIIQGVWGGLGI 188 Query: 181 TMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDI 240 MI+ +A + G+NPAL+E+A IDG N +Q F IT+PS+ F LITS +G L F Sbjct: 189 NMILYLAALQGVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQR 248 Query: 241 PQLFLAGGPDDSTLTTSMFIYGQAFK 266 + GGP+ ST T +++ AF+ Sbjct: 249 FMIMTEGGPNYSTTTVVYYLFLNAFR 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.145 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,742,811 Number of extensions: 896155 Number of successful extensions: 3502 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 3371 Number of HSP's successfully gapped: 152 Length of query: 323 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 216 Effective length of database: 26,037,693 Effective search space: 5624141688 Effective search space used: 5624141688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 116 (49.3 bits)