BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0009.p (284 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0903 [G] COG0395 ABC-type sugar transport system, permease com... 132 9e-31 BS_araQ [G] COG0395 ABC-type sugar transport system, permease co... 128 1e-29 BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 121 1e-27 all0261 [G] COG0395 ABC-type sugar transport system, permease co... 118 1e-26 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 117 2e-26 >BH0903 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 148/278 (53%), Gaps = 8/278 (2%) Query: 12 RKINKTIIYIVCI---FLAVLSILPFWIMFVNATRSTAEI-QSGLSLL--PSTHMMSNLR 65 RK + + +++ I F+A +++ P + + + R + E+ ++G++L+ PST + N Sbjct: 3 RKTSPILSWLLTIGFAFIAFIAVFPLLNLILASFRPSTELMRNGITLIFDPSTLTLDNFI 62 Query: 66 VLLDKSFDPIQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILCVMMIP 125 + ++ F NS IS +L++ FSS+ Y L YD+K R FF +L ++MIP Sbjct: 63 YIFTEAGLYWTWFGNSVWISIVIVVLSLLFSSMVGYALAVYDFKGRNFFFLLVLIILMIP 122 Query: 126 SQASAIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAARVDGSG 185 + + +Q M K+ N+ RQY L L E+++AAR+DG Sbjct: 123 FEILMLPLFQLMIKLQLVNTYTAVILPAIVAPIAVFFFRQYALG-LPKELMDAARIDGCT 181 Query: 186 EFRTFNRIILPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVSLLRGDIYK 245 E+ F +I+LPLM P++A AI + +WNN PL++L + +T+P+ ++ L Y Sbjct: 182 EYGIFFKIMLPLMGPSLAAMAILQGLNSWNNFLWPLVVLRSNDMFTLPIGLATLLTP-YG 240 Query: 246 TEFGSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVK 283 + + G +T +P+ +++ RY IAG+ +GGVK Sbjct: 241 NNYDILLAGSVMTIVPIVILFIFFQRYFIAGLTVGGVK 278 >BS_araQ [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 133/261 (50%), Gaps = 5/261 (1%) Query: 26 LAVLSILPFWIMFVNATRSTAEI-QSGLSLLPSTHMMS--NLRVLLDKSFDPIQGFLNSF 82 L++L + P + + + + + ++E+ + GL+L +MS N L + + F NS Sbjct: 22 LSLLYLFPIFCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNGGSIYFKWFFNSL 81 Query: 83 TISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILCVMMIPSQASAIGFYQFMYKIHW 142 + T+LT++FSS+ YGL YD+K R F +L +MM+P + + ++ +H Sbjct: 82 VLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHL 141 Query: 143 TNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAARVDGSGEFRTFNRIILPLMMPAV 202 +S RQY L L +++++AR+DG EF F RI+ PLM PA Sbjct: 142 IDSYTGVILPLIASPVAVFFFRQYALG-LPRDLLDSARMDGCTEFGIFFRIMAPLMKPAF 200 Query: 203 ATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVSLLRGDIYKTEFGSIYMGLALTALPL 262 I + +WNN PLI+L KE +T+P+ +S L Y + + G LP+ Sbjct: 201 GAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSP-YGNNYDMLISGSVFAILPV 259 Query: 263 FVVYFLLSRYIIAGVALGGVK 283 +++ +Y I+G+ +GGVK Sbjct: 260 IIIFLFFQKYFISGLTVGGVK 280 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 13/288 (4%) Query: 3 HNHKNGTVTRKINKTIIYIVCIFLAVLSILPFWIMFVNATRSTAEI-QSGLSLLPSTHMM 61 K G V+ K + + ++ LAVL + P +FV++ + +A I + SL+P ++ Sbjct: 15 ERKKAGRVSPK--RILFHVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFIL 72 Query: 62 SNLRVLLDKSFDPIQG--FL----NSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFF 115 SN + + I G FL NS I +TI V S++ AYG +K +K +F Sbjct: 73 SNY----AEGWKGIAGQPFLTFIKNSAIIVGLSTIGAVMSSAVIAYGFARIPFKGKKFWF 128 Query: 116 TFILCVMMIPSQASAIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEI 175 ++ +M+P + I Y K+ W NS + + T+ E+ Sbjct: 129 ACMMGTLMLPHEVLMIPQYIMFAKLDWLNSFKPIVVPQFFGHAFFIFLMIQFIRTIPEEL 188 Query: 176 VEAARVDGSGEFRTFNRIILPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVM 235 EAAR+DG G F F RIILPL+ PA+AT AIF+F W L PL+ L + E Y + + Sbjct: 189 DEAARIDGCGRFACFWRIILPLIAPALATSAIFSFYWKWEELIQPLLYLNKPELYPVSLA 248 Query: 236 VSLLRGDIYKTEFGSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVK 283 + L + +G+++ A++ LP+ +V+FL +YI+ G++ G+K Sbjct: 249 LKLFLDTESASNWGAMFAMSAVSLLPVILVFFLFQKYIVQGISTTGLK 296 >all0261 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 133/269 (49%), Gaps = 3/269 (1%) Query: 16 KTIIYIVCIFLAVLSILPFWIMFVNATRSTAEIQSGL-SLLPSTHMMSNLRVLLDKSFDP 74 K ++Y++ AV++++PF + + +EI SG + LP + N R + + Sbjct: 9 KVLLYVLLTTYAVITLVPFLWALSASFKPLSEIVSGTPNFLPQNFTLDNYRQIFLQEPLF 68 Query: 75 IQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILCVMMIPSQASAIGFY 134 ++ NS I+ S T+L + F+S+A Y L + + +F IL V+ +P+Q + I + Sbjct: 69 LRWLFNSVVIAVSVTLLNLLFNSMAGYALARLSFVGKNFWFFLILAVLAVPAQITLIPTF 128 Query: 135 QFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAARVDGSGEFRTFNRII 194 + I W NS MRQ+ + E+ EAA++DG F II Sbjct: 129 LILKAIGWLNSYQGMIVPSMVNATFIFMMRQFFI-NFPQELEEAAQLDGLNTIGIFRYII 187 Query: 195 LPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVSLLRGDIYKTEFGSIYMG 254 LPL PA+A QA+F F+ +WNN +P+++L + E +T+P+ ++ +G Y + + I Sbjct: 188 LPLAKPALAAQAVFVFMGSWNNFLLPVVILFEPEMFTLPLGLNTFKGQ-YISYWNYIMAA 246 Query: 255 LALTALPLFVVYFLLSRYIIAGVALGGVK 283 + LP +Y +RY I G K Sbjct: 247 SMVFTLPALSIYAFFNRYFIQSATFTGGK 275 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 137/284 (48%), Gaps = 5/284 (1%) Query: 3 HNHKNGTVTRKINKTII-YIVCIFLAVLSILPF-WIMFVNATRSTAEIQSGLSLLPSTHM 60 K+G+ ++ K I+ Y + ++ ++PF W++ A + +P Sbjct: 2 KTEKSGSPKWQLIKNILTYTIICLGGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKEPT 61 Query: 61 MSNLRVLLDKSFDPIQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILC 120 +N + + F ++ +NS ++ T+ + F S+AAY + R F L Sbjct: 62 TANFTQVFEM-FPMLRFLMNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLA 120 Query: 121 VMMIPSQASAIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAAR 180 MM+P+Q + I + M + W +S +RQ + + E+ EAA Sbjct: 121 TMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGTFLLRQAFMG-IPKELEEAAF 179 Query: 181 VDGSGEFRTFNRIILPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVSLLR 240 +DG+ F F ++ILPL P AT I F+ +WN+ PLI+ + +E T+P+ +SLL+ Sbjct: 180 MDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQ 239 Query: 241 GDIYKTEFGSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVKE 284 G Y T +G + G+ ++ +P+ VY +Y I G+A+ G+KE Sbjct: 240 GR-YGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE 282 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,280,288 Number of extensions: 635452 Number of successful extensions: 2376 Number of sequences better than 1.0e-05: 146 Number of HSP's gapped: 2194 Number of HSP's successfully gapped: 146 Length of query: 284 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 179 Effective length of database: 26,268,361 Effective search space: 4702036619 Effective search space used: 4702036619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)