BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0006.p (789 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L119891_1 [V] COG1136 ABC-type antimicrobial peptide transport s... 234 4e-61 AF1469 [V] COG1136 ABC-type antimicrobial peptide transport syst... 223 7e-58 AF1018 [V] COG1136 ABC-type antimicrobial peptide transport syst... 217 8e-56 CAC0319 [V] COG1136 ABC-type antimicrobial peptide transport sys... 214 6e-55 SP0786 [V] COG1136 ABC-type antimicrobial peptide transport syst... 209 1e-53 >L119891_1 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 11/264 (4%), Positives = 45/264 (17%), Gaps = 3/264 (1%) Query: 1 MLQLKNITKSYKTGDFTQVALDKVNLNFRESEFVAILGQSGSGKTTLLNIIGGLDQYDSG 60 + + G Q + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 61 ELVINGQSTEHFKDGDWDAYRNNSVGFIFQSYNLISHLSITDNVEMGMTLSGVTPAEKHR 120 + + + + + ++ P Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 121 KALEVLEKVGLKEHVHKKPNQLSGGQMQRVAIARALANNPDIILADEPTGALDTETSEQI 180 + + V L++ Q +++++ R + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 181 MELIKTIAED-KLVIMVTHNPELAESYADRVIRFSDGHAVSDSNPLANQKTSSSYKLKET 239 +D + V T + + + + + + Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQA-DGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 240 SMSFFTALKLSGKNIATKKWRTGL 263 ++ L+ + Sbjct: 242 TVYGTCMPMLNLTRR-KGQDIERY 264 >AF1469 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 223 bits (569), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 9/223 (4%), Positives = 36/223 (16%), Gaps = 3/223 (1%) Query: 1 MLQLKNITKSYKTGDFTQVALDKVNLNFRESEFVAILGQSGSGKTTLLNIIGGLDQYDSG 60 + + G Q + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 61 ELVINGQSTEHFKDGDWDAYRNNSVGFIFQSYNLISHLSITDNVEMGMTLSGVTPAEKHR 120 + + + + + ++ P Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 121 KALEVLEKVGLKEHVHKKPNQLSGGQMQRVAIARALANNPDIILADEPTGALDTETSEQI 180 + + V L++ Q +++++ R + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 181 MELIKTIAEDK--LVIMVTHNPELAESYADRVIRFSDGHAVSD 221 +D+ + + A+ Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEY 224 >AF1018 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 217 bits (552), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 8/225 (3%), Positives = 35/225 (15%), Gaps = 3/225 (1%) Query: 1 MLQLKNITKSYKTGDFTQVALDKVNLNFRESEFVAILGQSGSGKTTLLNIIGGLDQYDSG 60 + + G Q + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 61 ELVINGQSTEHFKDGDWDAYRNNSVGFIFQSYNLISHLSITDNVEMGMTLSGVTPAEKHR 120 + + + + + ++ P Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 121 KALEVLEKVGLKEHVHKKPNQLSGGQMQRVAIARALANNPDIILADEPTGALDTETSEQI 180 + + V L++ Q +++++ R + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 181 MELIKTIAE--DKLVIMVTHNPELAESYADRVIRFSDGHAVSDSN 223 + ++ + A+ Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEYVM 226 >CAC0319 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 214 bits (544), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 14/221 (6%), Positives = 44/221 (19%), Gaps = 3/221 (1%) Query: 2 LQLKNITKSYKTGDFTQVALDKVNLNFRESEFVAILGQSGSGKTTLLNIIGGLDQYDSGE 61 ++++ + ++LD V S++ + I S Sbjct: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 Query: 62 LVINGQSTEHFKDGDWDAYRNNSVGFIFQSYNLISHLSITDNVEMGMTLSGVTPAEKHRK 121 + + + ++ P Sbjct: 65 ALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 122 ALEVLEKVGLKEHVHKKPNQLSGGQMQRVAIARALANNPDIILADEPTGALDTETSEQIM 181 + + V L++ Q +++++ R + Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 182 ELIKTIAED-KLVIMVTHNPELAESYADRVIRFSDGHAVSD 221 +D + V T + + + Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGE 223 >SP0786 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 13/230 (5%), Positives = 35/230 (15%), Gaps = 2/230 (0%) Query: 1 MLQLKNITKSYKTGDFTQVALDKVNLNFRESEFVAILGQSGSGKTTLLNIIGGLDQYDSG 60 ++++ + ++LD V S++ + I S Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 61 ELVINGQSTEHFKDGDWDAYRNNSVGFIFQSYNLISHLSITDNVEMGMTLSGVTPAEKHR 120 + + + F+ + + E Sbjct: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 121 KALEVLEKVGLKEHVHKKPNQLSGGQMQRVAIARALANNPDIILADEPTGALDTETSEQI 180 E + S Q + Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 181 MELIKTI-AEDKLVIMVTHNPELAESYADRVIRFSDGHAVSDSNPLANQK 229 + E ++ + A Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQA-DGYVLTGHPVMLQGGEYVMFTYEGL 232 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 53,809,942 Number of extensions: 2279337 Number of successful extensions: 21747 Number of sequences better than 1.0e-05: 2227 Number of HSP's gapped: 18588 Number of HSP's successfully gapped: 2457 Length of query: 789 Length of database: 38,378,431 Length adjustment: 114 Effective length of query: 675 Effective length of database: 25,230,355 Effective search space: 17030489625 Effective search space used: 17030489625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 120 (50.8 bits)