BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0097.p (227 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr7822 [I] COG1183 Phosphatidylserine synthase 110 1e-24 SMc00552 [I] COG1183 Phosphatidylserine synthase 107 2e-23 AGc1962 [I] COG1183 Phosphatidylserine synthase 106 2e-23 CAC0676 [I] COG1183 Phosphatidylserine synthase 105 4e-23 BMEI1490 [I] COG1183 Phosphatidylserine synthase 105 8e-23 >mlr7822 [I] COG1183 Phosphatidylserine synthase Length = 248 Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 19/177 (10%) Query: 3 GIMMAFDGKLSMAAIMVIIAMLLDGLDGRVARALKCESEFGKELDSLSDVVSFGVAPALI 62 GI AF+ + A +MV++A LDG+DGR+AR LK S+FG ++DSL+D+V+FGVAPAL+ Sbjct: 18 GIRFAFEDRFETAVVMVLLAAFLDGIDGRLARMLKATSKFGAQMDSLADIVNFGVAPALV 77 Query: 63 MYITSLQDLNSALGWTVAAIFPVFGALRLARFNV-------RP-GIPGYFVGLPIPAAGG 114 +Y L D + GW A +F + LRLARFNV RP YFVG+P P AG Sbjct: 78 LY-AFLLDRAGSPGWIAALLFAIACGLRLARFNVLDDEKAERPLWQSEYFVGVPAP-AGA 135 Query: 115 VLATLALF------HKDVSAPYMIVA---TLLLSYLMVSTVKYPNFKKVGLPKKAVV 162 VL L L+ + S P VA T+L+++L+VS + + K + +P V+ Sbjct: 136 VLVMLPLYLFFLRLGLEPSRPAAFVATGFTILVAFLLVSRLPVYSGKSIKIPGDRVL 192 >SMc00552 [I] COG1183 Phosphatidylserine synthase Length = 289 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 93/155 (60%), Gaps = 14/155 (9%) Query: 3 GIMMAFDGKLSMAAIMVIIAMLLDGLDGRVARALKCESEFGKELDSLSDVVSFGVAPALI 62 G+ +AF+ + +A MV++A LDG+DGR+AR LK S FG ++DSL+D+++FGVAPAL+ Sbjct: 57 GVRLAFENRFELAVAMVLLAAFLDGIDGRIARLLKATSSFGVQMDSLADIINFGVAPALV 116 Query: 63 MYITSLQDLNSALGWTVAAIFPVFGALRLARFNV-------RPGIPGYFVGLPIPAAGGV 115 +Y+ L D +LGW A I+ + LRLARFNV YFVG+P PA + Sbjct: 117 LYVF-LLDQARSLGWIAALIYAIAVGLRLARFNVMAERQVKASWQSEYFVGVPAPAGAML 175 Query: 116 ------LATLALFHKDVSAPYMIVATLLLSYLMVS 144 L L L + A V T+L+++LMVS Sbjct: 176 VLLPVYLGLLGLAPERTFALIASVYTVLIAFLMVS 210 >AGc1962 [I] COG1183 Phosphatidylserine synthase Length = 290 Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 16/156 (10%) Query: 3 GIMMAFDGKLSMAAIMVIIAMLLDGLDGRVARALKCESEFGKELDSLSDVVSFGVAPALI 62 G+ +A +G+ +A MV++A LDG+DGRVAR +K S+FG+++DSL+D+V+FGVAPAL+ Sbjct: 52 GVRLAIEGRFELAVGMVLLAAFLDGVDGRVARMMKATSKFGEQMDSLADIVNFGVAPALV 111 Query: 63 MYITSLQDLNSALGWTVAAIFPVFGALRLARFNVR-------PGIPGYFVGLPIPAAGGV 115 +YI L D ++GW A I+ + LRLARFNV P +FVG+P P G + Sbjct: 112 VYIY-LLDQARSIGWIGALIYVIAAGLRLARFNVMIERPVKAPWQSEFFVGVPAP-MGAM 169 Query: 116 LATLALF----HKDVSAPYMIVA---TLLLSYLMVS 144 L L ++ + P+ VA T+L+ YL++S Sbjct: 170 LVLLPVYLGFLGVEPDKPFAYVAAAYTVLIGYLLIS 205 >CAC0676 [I] COG1183 Phosphatidylserine synthase Length = 211 Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 9/139 (6%), Positives = 25/139 (17%), Gaps = 6/139 (4%) Query: 14 MAAIMVIIAMLLDGLDGRVARALKCESEFGKELDSLSDVVSFGVAPALIMY-ITSLQDLN 72 ++A +++ + + + G+ + I + + L Sbjct: 38 LSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILL 97 Query: 73 SALGWTVAAIFPVFGALRLARFNVRPGIPGYFVGLPIPAAGGVLATLALFH----KDVSA 128 V AL + A + Sbjct: 98 EQHNGEVPEDRAALEALPGVGRKTAN-VVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNV 156 Query: 129 PYMIVATLLLSYLMVSTVK 147 + L + Sbjct: 157 EQVEEKLLKVVPAEFKVDC 175 >BMEI1490 [I] COG1183 Phosphatidylserine synthase Length = 211 Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 0/167 (0%), Positives = 0/167 (0%), Gaps = 16/167 (9%) Query: 3 GIMMAFDGKLSMAAIMVIIAMLLDGLDGRVARALKCESEFGKELDSLSDVVSFGVAPALI 62 M G + + I + + + + E+ + Sbjct: 61 PAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRK 120 Query: 63 MYITSLQDLNSALGWTVAAIFPVFGALRLARFNV------RPGIP-GYFVGLPIPAAGGV 115 L + R + + Sbjct: 121 TANVVL-NTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVD-CHHW 178 Query: 116 LATLALFHKDVS-APYMIVA------TLLLSYLMVSTVKYPNFKKVG 155 L + Sbjct: 179 LILHGRYTCIARKPRCGSCIIEDLCE 225 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,700,956 Number of extensions: 510955 Number of successful extensions: 1286 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 1277 Number of HSP's successfully gapped: 7 Length of query: 227 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 124 Effective length of database: 26,499,029 Effective search space: 3285879596 Effective search space used: 3285879596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 114 (48.5 bits)