BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0092.p (487 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1351 [C] COG2440 Ferredoxin-like protein 365 e-101 TM1351 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 365 e-101 VC2214 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 353 5e-97 ZgltX [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 351 2e-96 gltX [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 351 2e-96 >STM1351 [C] COG2440 Ferredoxin-like protein Length = 97 Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust. Identities = 0/487 (0%), Positives = 0/487 (0%), Gaps = 24/487 (4%) Query: 5 VRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQLKYLK 64 ++ R+ + + +++ + Sbjct: 2 SSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKACPAGLYKLDDAGNIHFD 61 Query: 65 WLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXXXXXX 124 Sbjct: 62 121 Query: 125 XXXTPRYSGK--HRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSKEM 182 Sbjct: 122 - 180 Query: 183 GDFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFGHM 242 Sbjct: 181 240 Query: 243 TLIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWS-PEGEEEIFSKEELI 301 Sbjct: 241 --- 297 Query: 302 SIFTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQA 361 Sbjct: 298 ----- 352 Query: 362 WAESLVALYQEQMTSASNIVELSELFFR--SHVELETEAAQILAESQVPEVLSAFLAKVE 419 Sbjct: 353 ------- 405 Query: 420 ATGEFTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIER 479 Sbjct: 406 --- 462 Query: 480 LKSQIKG 486 Sbjct: 463 469 >TM1351 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases Length = 252 Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust. Identities = 0/487 (0%), Positives = 0/487 (0%), Gaps = 24/487 (4%) Query: 5 VRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQLKYLK 64 + L + N+ + + + + + Sbjct: 2 SDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITGI 61 Query: 65 WLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXXXXXX 124 + + + + V +L+ + + Sbjct: 62 DSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLLN 121 Query: 125 XXXTPRYSGK--HRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSKEM 182 T + E + + DI+ + Sbjct: 122 PQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLA-GVHAYYDILSEAGCEVDIWR 180 Query: 183 GDFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFGHM 242 + ++ A + Q++ + E Sbjct: 181 TTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLQENGQILLA 240 Query: 243 TLIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWS-PEGEEEIFSKEELI 301 Sbjct: 241 --- 297 Query: 302 SIFTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQA 361 Sbjct: 298 ----- 352 Query: 362 WAESLVALYQEQMTSASNIVELSELFFR--SHVELETEAAQILAESQVPEVLSAFLAKVE 419 Sbjct: 353 ------- 405 Query: 420 ATGEFTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIER 479 Sbjct: 406 --- 462 Query: 480 LKSQIKG 486 Sbjct: 463 469 >VC2214 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases Length = 252 Score = 353 bits (905), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 0/477 (0%), Positives = 0/477 (0%), Gaps = 18/477 (3%) Query: 5 VRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQLKYLK 64 + S A + + V+ +I + Q L Sbjct: 38 LGCGPGNSTALLQQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLI 97 Query: 65 WLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXXXXXX 124 + P L + + + + Sbjct: 98 FANASLQW--------LPDHYELFPHLVSLLNPQGVLAVQMPDNWLEPTHVLMREVAWEQ 149 Query: 125 XXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSKEMGD 184 + G I + + I+ + + Sbjct: 150 NYPDRGREPLAGVHAYYDILS--EAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQ 207 Query: 185 FVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFGHMTL 244 Sbjct: 208 267 Query: 245 IVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEELISIF 304 Sbjct: 268 --- 324 Query: 305 TANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQAWAE 364 Sbjct: 325 ----- 379 Query: 365 SLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEATGEF 424 Sbjct: 380 439 Query: 425 TASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERLK 481 Sbjct: 440 496 >ZgltX [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases Length = 346 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 0/481 (0%), Positives = 0/481 (0%), Gaps = 21/481 (4%) Query: 4 QVRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQLKYL 63 Q S T A + ++ Sbjct: 2 QYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61 Query: 64 KWLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXXXXX 123 + L + + + + + + Sbjct: 62 QGLTETYVG--------NWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREA 113 Query: 124 XXXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSKEMG 183 R + +L + R + ++ T + + E Sbjct: 114 LHDSLKRLQTDYLDLYQ-----VHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQ 168 Query: 184 DFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFGHMT 243 ++ G+ + + H L I N L +G Sbjct: 169 RAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGV 228 Query: 244 LIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEELISI 303 ++ + + + Sbjct: 229 ELLAYSCLGFGTLTGKY--LNGAKPAGARNTLFSRFTRYSGEQT-QKAVAAYVDIARRHG 285 Query: 304 FTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQAWA 363 +++ + + L I +L + + E Sbjct: 286 LDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSED-----VLAEIEAVHQV 340 Query: 364 ESLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEATGE 423 Sbjct: 341 400 Query: 424 FTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERLKSQ 483 Sbjct: 401 460 Query: 484 I 484 Sbjct: 461 461 >gltX [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases Length = 252 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 0/481 (0%), Positives = 0/481 (0%), Gaps = 21/481 (4%) Query: 4 QVRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQLKYL 63 A L + +++ + Sbjct: 2 SDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITGI 61 Query: 64 KWLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXXXXX 123 E + + + L Sbjct: 62 DSSPAMIAE--------ARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELF 113 Query: 124 XXXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSKEMG 183 + + + + R D + ++ Sbjct: 114 PHLVSLLNPQGVLAVQM-----PDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDI 168 Query: 184 DFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFGHMT 243 + I + + H I V + Sbjct: 169 LSEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQ 228 Query: 244 LIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEELISI 303 + ++ + L Sbjct: 229 YPLQENGQILLAFPRLF--- 285 Query: 304 FTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQAWA 363 Sbjct: 286 ----- 340 Query: 364 ESLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEATGE 423 Sbjct: 341 400 Query: 424 FTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERLKSQ 483 Sbjct: 401 460 Query: 484 I 484 Sbjct: 461 461 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,389,640 Number of extensions: 1499249 Number of successful extensions: 9394 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 9190 Number of HSP's successfully gapped: 91 Length of query: 487 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 377 Effective length of database: 25,691,691 Effective search space: 9685767507 Effective search space used: 9685767507 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)