BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0083.p (177 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC0323 [K] COG0250 Transcription antiterminator 142 3e-34 nusG [K] COG0250 Transcription antiterminator 142 4e-34 ZnusG [K] COG0250 Transcription antiterminator 142 4e-34 ECs4905 [K] COG0250 Transcription antiterminator 142 4e-34 >VC0323 [K] COG0250 Transcription antiterminator Length = 182 Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 111/177 (62%), Gaps = 4/177 (2%) Query: 3 KRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVNKDGKKKTVMRKVYP 62 KRWYVV +SG+E +V +L + ++ GME+ VLVP EE + + G+++ RK +P Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLVEMVQTDDSWYVVRNTPXXXXXXXXXXXXXKPTALLPEEVEQILKHM--GMVEPKA 120 GYVLV+M+ D+SW++VR+ P +P + +E + IL + P+ Sbjct: 67 GYVLVQMIMNDESWHLVRSVP--RVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRP 124 Query: 121 KIDFEIKESVRIMVGPFANFVGSVEEILADKSKIKVHVNMFGRETPLELDFTQVEKI 177 K FE E VR+ GPFA+F G+VEE+ +KS++KV V++FGR TP+EL+F QVEK+ Sbjct: 125 KTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >nusG [K] COG0250 Transcription antiterminator Length = 181 Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 4/176 (2%) Query: 3 KRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVNKDGKKKTVMRKVYP 62 KRWYVV +SG+E +V +L + ++ MED V+VP EE + + G+++ RK +P Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLVEMVQTDDSWYVVRNTPXXXXXXXXXXXXXKPTALLPEEVEQILKHMGMV--EPKA 120 GYVLV+MV D SW++VR+ P +P + +EV+ I+ + V +P+ Sbjct: 67 GYVLVQMVMNDASWHLVRSVP--RVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 Query: 121 KIDFEIKESVRIMVGPFANFVGSVEEILADKSKIKVHVNMFGRETPLELDFTQVEK 176 K FE E VR+ GPFA+F G VEE+ +KS++KV V++FGR TP+ELDF+QVEK Sbjct: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >ZnusG [K] COG0250 Transcription antiterminator Length = 181 Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 4/176 (2%) Query: 3 KRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVNKDGKKKTVMRKVYP 62 KRWYVV +SG+E +V +L + ++ MED V+VP EE + + G+++ RK +P Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLVEMVQTDDSWYVVRNTPXXXXXXXXXXXXXKPTALLPEEVEQILKHMGMV--EPKA 120 GYVLV+MV D SW++VR+ P +P + +EV+ I+ + V +P+ Sbjct: 67 GYVLVQMVMNDASWHLVRSVP--RVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 Query: 121 KIDFEIKESVRIMVGPFANFVGSVEEILADKSKIKVHVNMFGRETPLELDFTQVEK 176 K FE E VR+ GPFA+F G VEE+ +KS++KV V++FGR TP+ELDF+QVEK Sbjct: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 4/176 (2%) Query: 3 KRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVNKDGKKKTVMRKVYP 62 KRWYVV +SG+E +V +L + ++ MED V+VP EE + + G+++ RK +P Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLVEMVQTDDSWYVVRNTPXXXXXXXXXXXXXKPTALLPEEVEQILKHMGMV--EPKA 120 GYVLV+MV D SW++VR+ P +P + +EV+ I+ + V +P+ Sbjct: 67 GYVLVQMVMNDASWHLVRSVP--RVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 Query: 121 KIDFEIKESVRIMVGPFANFVGSVEEILADKSKIKVHVNMFGRETPLELDFTQVEK 176 K FE E VR+ GPFA+F G VEE+ +KS++KV V++FGR TP+ELDF+QVEK Sbjct: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >ECs4905 [K] COG0250 Transcription antiterminator Length = 181 Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 4/176 (2%) Query: 3 KRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVNKDGKKKTVMRKVYP 62 KRWYVV +SG+E +V +L + ++ MED V+VP EE + + G+++ RK +P Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLVEMVQTDDSWYVVRNTPXXXXXXXXXXXXXKPTALLPEEVEQILKHMGMV--EPKA 120 GYVLV+MV D SW++VR+ P +P + +EV+ I+ + V +P+ Sbjct: 67 GYVLVQMVMNDASWHLVRSVP--RVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 Query: 121 KIDFEIKESVRIMVGPFANFVGSVEEILADKSKIKVHVNMFGRETPLELDFTQVEK 176 K FE E VR+ GPFA+F G VEE+ +KS++KV V++FGR TP+ELDF+QVEK Sbjct: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,092,616 Number of extensions: 449993 Number of successful extensions: 970 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 962 Number of HSP's successfully gapped: 10 Length of query: 177 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 78 Effective length of database: 26,960,365 Effective search space: 2102908470 Effective search space used: 2102908470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 112 (47.8 bits)