BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0082.p
         (141 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0119 [J] COG0080 Ribosomal protein L11                              248   1e-66
STM0454 [R] COG0824 Predicted thioesterase                            202   2e-52
BH0409 [J] COG0080 Ribosomal protein L11                              141   3e-34
YNL185c [J] COG0080 Ribosomal protein L11                             108   2e-24
SPAC1486.07c [J] COG0080 Ribosomal protein L11                        107   5e-24

>BH0119 [J] COG0080 Ribosomal protein L11
          Length = 141

 Score =  248 bits (634), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 130/141 (92%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNART+DQAGLIIPVEITV
Sbjct: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTSDQAGLIIPVEITV 60

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
           FEDRSFTF+TKTPPAAVLL+ AA +E GSGEPN+ KVA + R  VREIAETKMPDLNAA 
Sbjct: 61  FEDRSFTFVTKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAD 120

Query: 121 IEAAMRMVEGTARSMGITIED 141
           +EAAMRMVEGTARSMGI IED
Sbjct: 121 VEAAMRMVEGTARSMGIVIED 141


>STM0454 [R] COG0824 Predicted thioesterase
          Length = 132

 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 0/141 (0%), Positives = 0/141 (0%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           M  ++             N A  +          +            + A +++ + I  
Sbjct: 1   MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWMTARNIAFVVVNININY 60

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
                 + +         L   + V   +     +              + K        
Sbjct: 61  RRPAVLSDLLTVTSQVQQLNGKSGVLSQTITLEPEGQVVADALITFVCIDLKTQKALPLE 120

Query: 121 IEAAMRMVEGTARSMGITIED 141
                                
Sbjct: 121                       141


>BH0409 [J] COG0080 Ribosomal protein L11
          Length = 141

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 96/141 (68%), Gaps = 1/141 (0%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           M K + ++V + + AGKANPA  VG  L   G+N++ FC ++N  T  Q GL++P +IT+
Sbjct: 1   MEKVIKQIVTINLEAGKANPAK-VGKDLAPTGINLLGFCNQYNEMTKLQLGLVVPAKITI 59

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
           +EDRSF    KTPPAA LL+  A VEKG+ +P K+ V  +    +R IAE K+PDLN  S
Sbjct: 60  YEDRSFNVKLKTPPAAFLLKKYAGVEKGAAQPGKEVVGSITTQQLRTIAEIKLPDLNTTS 119

Query: 121 IEAAMRMVEGTARSMGITIED 141
           I+ AM+++ GTAR+MGI IED
Sbjct: 120 IDRAMKIIAGTARNMGINIED 140


>YNL185c [J] COG0080 Ribosomal protein L11
          Length = 158

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 92/154 (59%), Gaps = 18/154 (11%)

Query: 2   AKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTAD-QAGLIIPVEITV 60
           AK VI  VKL + AG+A P+PPVGPALG  G+  + FCKEFNAR+A+ Q G+ +PV IT+
Sbjct: 5   AKNVI--VKLIVGAGQAAPSPPVGPALGSKGIKAIDFCKEFNARSANYQPGVPVPVLITI 62

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPN-------------KKKVAKLGRAAVRE 107
             DR+FTF  K+PP   LL  A K++KG G+PN              + + +L    V E
Sbjct: 63  KPDRTFTFEMKSPPTGYLLLKALKMDKGHGQPNVGTMLGSAPAKGPTRALGELSLKHVYE 122

Query: 108 IAETKMPDLNAA--SIEAAMRMVEGTARSMGITI 139
           IA+ K  D   +   +E  ++ + G A+SMGI +
Sbjct: 123 IAKIKKSDERHSLLEMEGIVKSIVGVAKSMGIKV 156


>SPAC1486.07c [J] COG0080 Ribosomal protein L11
          Length = 144

 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 3/142 (2%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQ-AGLIIPVEIT 59
           MA     ++KL +PAGKA P PP+GPALG  G+  + FCKEFNARTA       +P +IT
Sbjct: 1   MASTRTTIIKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKIT 60

Query: 60  VFEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAA 119
           V   R+FTF   TPP + L+     +EKGS  P      +L    + EIA+ K  D +  
Sbjct: 61  VTPQRTFTFTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQ 120

Query: 120 SIE--AAMRMVEGTARSMGITI 139
            IE  +  + V GTA+SMG+ +
Sbjct: 121 GIELLSLCKSVIGTAKSMGVKV 142


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,022,205
Number of extensions: 308206
Number of successful extensions: 919
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 5
Length of query: 141
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 45
Effective length of database: 27,306,367
Effective search space: 1228786515
Effective search space used: 1228786515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)