BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0075.p
         (83 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ybxF [J] COG1358 Ribosomal protein HS6-type (S12/L30/L7a)           78   4e-15
BH0128 [J] COG1358 Ribosomal protein HS6-type (S12/L30/L7a)            66   1e-11
CAC3141 [J] COG1358 Ribosomal protein HS6-type (S12/L30/L7a)           62   3e-10

>BS_ybxF [J] COG1358 Ribosomal protein HS6-type (S12/L30/L7a)
          Length = 82

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 54/81 (66%)

Query: 1  MTDDMGLQDAQVKIGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVD 60
          M+ D   Q   + IGTKQTVKA++ G   EV VA+D D  LTS +V L   QG+ ++ V+
Sbjct: 1  MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVE 60

Query: 61 TMLNLGKACGIEVGAAMAAVL 81
          +M  LGKACGIEVGAA  A++
Sbjct: 61 SMKKLGKACGIEVGAAAVAII 81


>BH0128 [J] COG1358 Ribosomal protein HS6-type (S12/L30/L7a)
          Length = 82

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 14 IGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVDTMLNLGKACGIEV 73
          IGTKQT+KA+E  +  EV +A+D + R+ +++  + + + + I YVD+M  LGKACGI+V
Sbjct: 14 IGTKQTLKALEQEEVLEVVIAKDAEPRVVNKVEAMASVKQIPIIYVDSMKKLGKACGIDV 73

Query: 74 GAAMAAVLK 82
          GAA  A+ K
Sbjct: 74 GAATVALKK 82


>CAC3141 [J] COG1358 Ribosomal protein HS6-type (S12/L30/L7a)
          Length = 79

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query: 14 IGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVDTMLNLGKACGIEV 73
          +G KQ++KA+   +A  VY+A+D +  L   +  L N+  ++I YVDTM  LGK C I+V
Sbjct: 11 VGMKQSLKAINEKKAQMVYIAKDAESELFQTVEKLANEHSLQIVYVDTMKELGKLCNIDV 70

Query: 74 GAAMAAVLK 82
           A+ A VLK
Sbjct: 71 EASTAVVLK 79


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,947,779
Number of extensions: 147420
Number of successful extensions: 331
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 4
Length of query: 83
Length of database: 38,378,431
Length adjustment: 53
Effective length of query: 30
Effective length of database: 32,265,729
Effective search space: 967971870
Effective search space used: 967971870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)