BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0074.p
         (64 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1505 [MR] COG4948 L-alanine-DL-glutamate epimerase and relate...   108   3e-24
aq_735 [J] COG0048 Ribosomal protein S12                              104   4e-23
aq_1834 [J] COG0048 Ribosomal protein S12                             104   4e-23
SPAC4F8.06 [J] COG0048 Ribosomal protein S12                           97   5e-21
YNR036c [J] COG0048 Ribosomal protein S12                              90   8e-19

>STM1505 [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes
           of enolase superfamily
          Length = 252

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 2/64 (3%), Positives = 3/64 (4%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
                           V           A                             + 
Sbjct: 65  PAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLLNPQG 124

Query: 61  KAKK 64
               
Sbjct: 125 VLAV 128


>aq_735 [J] COG0048 Ribosomal protein S12
          Length = 128

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 55/64 (85%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           VTAYIPG GHNLQEHS+VL+RGG+VKDL GVRY I+RGALD AGV  R Q+RSKYG KRP
Sbjct: 63  VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGALDAAGVEGRRQSRSKYGTKRP 122

Query: 61  KAKK 64
           K +K
Sbjct: 123 KEEK 126


>aq_1834 [J] COG0048 Ribosomal protein S12
          Length = 397

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 4/64 (6%), Positives = 17/64 (26%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
               +      L+E     L+  ++       Y+     +         + + +   ++ 
Sbjct: 63  TEGLLLEKEGKLKEAIQAYLKSIELNPYYNPSYYRFNFLIRKVENKEIYREKIRKILEKR 122

Query: 61  KAKK 64
             + 
Sbjct: 123 FKEA 126


>SPAC4F8.06 [J] COG0048 Ribosomal protein S12
          Length = 146

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           VTAYIPGIGHN QEH+VVLLRGG+ +D  GV+YH+VRG  D AGVA R+ +RSKYG K+P
Sbjct: 84  VTAYIPGIGHNAQEHAVVLLRGGRAQDCPGVQYHVVRGVYDIAGVAGRVTSRSKYGVKKP 143

Query: 61  KA 62
           KA
Sbjct: 144 KA 145


>YNR036c [J] COG0048 Ribosomal protein S12
          Length = 153

 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 51/60 (85%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           V+AYIPG GH+ QEHS+V +RGG+ +DL GV+YH++RGA D +GV NR+ +RSKYGAK+P
Sbjct: 91  VSAYIPGEGHDAQEHSIVYVRGGRCQDLPGVKYHVIRGAGDLSGVVNRISSRSKYGAKKP 150


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,652,763
Number of extensions: 129610
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 5
Length of query: 64
Length of database: 38,378,431
Length adjustment: 36
Effective length of query: 28
Effective length of database: 34,226,407
Effective search space: 958339396
Effective search space used: 958339396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)