BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0072.p
         (140 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

aq_734 [J] COG0049 Ribosomal protein S7                               131   3e-31
aq_1832 [J] COG0049 Ribosomal protein S7                              126   9e-30
SPAC16E8.10c [J] COG0049 Ribosomal protein S7                          76   2e-14
YJR113c [J] COG0049 Ribosomal protein S7                               61   4e-10
YJR123w [J] COG0049 Ribosomal protein S7                               50   1e-06

>aq_734 [J] COG0049 Ribosomal protein S7
          Length = 160

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 92/143 (64%), Gaps = 4/143 (2%)

Query: 2   YNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVKA 61
           Y   LV +LIN++M  GK+ VA+ I+Y + +   +     P+E+    I+ + P  EV+ 
Sbjct: 18  YGDVLVQKLINKVMKDGKKSVAEWIVYTALEEAAKEVNMHPVELLHKVIEKLKPEWEVRP 77

Query: 62  RRVGGANYQVPIEVKPERRTALGLRWLVNYSRN----RGEKTMEERLAAEIIDASNNTGA 117
           RRVGGA YQVPIEV   R+ +L ++WLV  +R     RG+ TM ERL AE++DA N  G 
Sbjct: 78  RRVGGATYQVPIEVPERRQISLAIKWLVQAARERPRGRGQYTMIERLKAELLDALNERGG 137

Query: 118 SVKKREDTHKMAEANKAFAHYRW 140
           + KK+E+TH+MA AN  F+H+RW
Sbjct: 138 AYKKKEETHRMAHANMVFSHFRW 160


>aq_1832 [J] COG0049 Ribosomal protein S7
          Length = 397

 Score =  126 bits (317), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 15/143 (10%), Positives = 36/143 (25%), Gaps = 4/143 (2%)

Query: 2   YNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVKA 61
              K   R + +    GK    +  +  S+      T ++ ++++   +         +A
Sbjct: 18  ELEKGKIRELFKKFYEGKTNDLELKVLKSYFENLNITVEDYVKLYTEGLLLEKEGKLKEA 77

Query: 62  RRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRG----EKTMEERLAAEIIDASNNTGA 117
            +    + ++     P       L   V           +   +    A  +   N    
Sbjct: 78  IQAYLKSIELNPYYNPSYYRFNFLIRKVENKEIYREKIRKILEKRFKEAPPVLVENPENH 137

Query: 118 SVKKREDTHKMAEANKAFAHYRW 140
            V   E   +     K       
Sbjct: 138 YVFLVEKMSQYLFVFKGKKLEGM 160


>SPAC16E8.10c [J] COG0049 Ribosomal protein S7
          Length = 241

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 73/133 (54%)

Query: 7   VTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVKARRVGG 66
           V  L+N IM  GK+  A+ I+  +  +IQ+ TG+ P++V + AI  I P++++ + +   
Sbjct: 108 VQHLVNLIMRDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSAKRFN 167

Query: 67  ANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVKKREDTH 126
            + + P+ +K  +R  + L+W++   ++   K + +R+  EII   + T    KK++  H
Sbjct: 168 KSVEFPMPLKERQRRRIALQWILGECKSSSPKRLSDRIVKEIIAIRSKTSNCFKKKDHLH 227

Query: 127 KMAEANKAFAHYR 139
           +M   N+  A  R
Sbjct: 228 RMCLVNRGNAPVR 240


>YJR113c [J] COG0049 Ribosomal protein S7
          Length = 247

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 7   VTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVKARRVGG 66
           +  + N IM  GK+  AQ+IL  +  L+  +T ++P++  E ++  + P++  K    G 
Sbjct: 114 LDHITNMIMRHGKKEKAQTILSRALYLVYCQTRQDPIQALEKSLDELAPLMMTKTFNTGV 173

Query: 67  ANYQV-PIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVKKREDT 125
           A   V P+ +   +R  +   W+V  +  R       RL  E+   +  T ++ +KR+  
Sbjct: 174 AKASVIPVPLNKRQRNRIAWNWIVQSANQRVSSDFAVRLGEELTAIAKGTSSAFEKRDQI 233

Query: 126 HKMAEANKAF 135
           HK A A++A+
Sbjct: 234 HKTAIAHRAY 243


>YJR123w [J] COG0049 Ribosomal protein S7
          Length = 225

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 9/137 (6%)

Query: 6   LVTRLINRIMLGG----KRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVKA 61
           ++ RL N +M+ G    K+  A  I+ ++  +I   T + P++V   AI N  P  +   
Sbjct: 89  IIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTR 148

Query: 62  RRVGGANYQVPIEVKPERRTALGLRWLVNYSRN---RGEKTMEERLAAEIIDAS--NNTG 116
              GGA  +  ++V P RR    +  L   +R    R  KT+ E LA E+I+A+  ++T 
Sbjct: 149 VGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTS 208

Query: 117 ASVKKREDTHKMAEANK 133
            ++KK+++  ++A++N+
Sbjct: 209 YAIKKKDELERVAKSNR 225


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,714,266
Number of extensions: 374068
Number of successful extensions: 746
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 7
Length of query: 140
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 44
Effective length of database: 27,306,367
Effective search space: 1201480148
Effective search space used: 1201480148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)