BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0064.p (207 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YGR220c [J] COG0087 Ribosomal protein L3 139 2e-33 SPAC644.17c [J] COG0087 Ribosomal protein L3 130 2e-30 MTH216 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ... 62 7e-10 MTH249 [M] COG0794 Predicted sugar phosphate isomerase involved ... 62 7e-10 MTH247 [G] COG1082 Sugar phosphate isomerases/epimerases 62 7e-10 >YGR220c [J] COG0087 Ribosomal protein L3 Length = 269 Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 122/209 (58%), Gaps = 4/209 (1%) Query: 3 GILGKKLGMTQVFT-PEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 G++ +K GM F G A +++E V+ + ++GY A Q+G+ + S+ + Sbjct: 60 GLITRKKGMMPYFDKSTGERSAATILEVNNVEVIMHRTSEVNGYFACQVGYGSRHLSKVS 119 Query: 62 KPEQGHAKKANATPKRYVREIRGVD-LGALEVGQELKADIFTEGEFVDVTGTTKGKGFQG 120 + GH PK +V E R D G + G LK F EG++VDV +KGKGF G Sbjct: 120 RQMLGHFASKVVNPKEHVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTG 179 Query: 121 VIKRWGQSRGPMAHG-SRYHRRPGSMGSIQ-ANRVPKGKRLPGHMGHTTVTVQRLEIIKV 178 V+KR+G +HG S HR GS G Q RV G+++PGHMG+ VT+Q ++++KV Sbjct: 180 VMKRYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPGRKMPGHMGNEHVTIQNVKVLKV 239 Query: 179 DVERNVLLVKGAIPGPKNSFVKVKETVKK 207 D E NV+ VKG++ GPKNSFVK+++ +KK Sbjct: 240 DDENNVIWVKGSVAGPKNSFVKIQDAIKK 268 >SPAC644.17c [J] COG0087 Ribosomal protein L3 Length = 259 Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 116/209 (55%), Gaps = 4/209 (1%) Query: 3 GILGKKLGMTQVFTPE-GNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 G++ K GMT + + G + +++++ + + GY AVQ+G +K Sbjct: 45 GVILVKKGMTNAWDEKTGMQVPLTILQFDRVQAIDVRTKEKHGYYAVQVGSGIRKPKSIT 104 Query: 62 KPEQGHAKKANATPKRYVREIRGVDL-GALEVGQELKADIFTEGEFVDVTGTTKGKGFQG 120 K EQG+ N PK +VRE R D G + G D F ++VDV G TKGKGF G Sbjct: 105 KAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGTIFTTDYFKPKQYVDVKGITKGKGFAG 164 Query: 121 VIKRWGQSRGPMAHG-SRYHRRPGSMG-SIQANRVPKGKRLPGHMGHTTVTVQRLEIIKV 178 V+KRWG S G +HG S HR PGS G + +RV G+++ GHMGH + TV+ L + V Sbjct: 165 VMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPGRKMAGHMGHRSRTVKNLLVWAV 224 Query: 179 DVERNVLLVKGAIPGPKNSFVKVKETVKK 207 D + +LVKG+IPGP S V V +T+ + Sbjct: 225 DADLECILVKGSIPGPNKSAVYVTDTINR 253 >MTH216 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Length = 211 Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 0/141 (0%), Positives = 0/141 (0%), Gaps = 24/141 (17%) Query: 89 ALEV-GQELKA-DIFTEGEFVDVTGTTKGKGFQGVIKRWG--QSRGPMAHGSRYHRRPGS 144 + Sbjct: 176 HHWLILHGRYTC- 234 Query: 145 MGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVD-------------------VERNVL 185 Sbjct: 235 294 Query: 186 LVKGAIPGPKNSFVKVKETVK 206 Sbjct: 295 315 >MTH249 [M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation Length = 337 Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 24/141 (17%) Query: 89 ALEV-GQELKA-DIFTEGEFVDVTGTTKGKGFQGVIKRWG--QSRGPMAHGSRYHRRPGS 144 ALE+ G++++A +IF+EG FVD TKGKGFQG +KRWG G A S+ R GS Sbjct: 176 ALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSK-GRHIGS 234 Query: 145 MGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVD-------------------VERNVL 185 +G +R G MG+ T +I+K+ V + + Sbjct: 235 LGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADLVNPDGGFVRYGLVRNDYV 294 Query: 186 LVKGAIPGPKNSFVKVKETVK 206 ++KG++PGP V +++ ++ Sbjct: 295 MIKGSVPGPTKRLVVLRKAIR 315 >MTH247 [G] COG1082 Sugar phosphate isomerases/epimerases Length = 337 Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 24/141 (17%) Query: 89 ALEV-GQELKA-DIFTEGEFVDVTGTTKGKGFQGVIKRWG--QSRGPMAHGSRYHRRPGS 144 ALE+ G++++A +IF+EG FVD TKGKGFQG +KRWG G A S+ R GS Sbjct: 176 ALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSK-GRHIGS 234 Query: 145 MGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVD-------------------VERNVL 185 +G +R G MG+ T +I+K+ V + + Sbjct: 235 LGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADLVNPDGGFVRYGLVRNDYV 294 Query: 186 LVKGAIPGPKNSFVKVKETVK 206 ++KG++PGP V +++ ++ Sbjct: 295 MIKGSVPGPTKRLVVLRKAIR 315 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,857,311 Number of extensions: 646236 Number of successful extensions: 720 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 689 Number of HSP's successfully gapped: 29 Length of query: 207 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 105 Effective length of database: 26,614,363 Effective search space: 2794508115 Effective search space used: 2794508115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 113 (48.1 bits)