BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0063.p
         (207 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1499 [C] COG0243 Anaerobic dehydrogenases, typically selenocy...   154   7e-38
SPBC2D10.08c [J] COG0088 Ribosomal protein L4                         106   3e-23
YML025c [J] COG0088 Ribosomal protein L4                               54   1e-07

>STM1499 [C] COG0243 Anaerobic dehydrogenases, typically
           selenocysteine-containing
          Length = 813

 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 7/226 (3%), Positives = 29/226 (12%), Gaps = 19/226 (8%)

Query: 1   MPKVTLFNIXXXXXXXXXXXXTVFGIEPNVHVLHEAVLMQRASLRRGTHKVKGRSEVRGG 60
           M                              V     +   A+  +   + +    V G 
Sbjct: 1   MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGA 60

Query: 61  GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYSWKLPKKVRRLAIKSALSSKVIG 120
                  +   R           +                  +        +        
Sbjct: 61  CSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDRLNYP 120

Query: 121 NDIIVLDSLTMNAPKTKEFAAILNNLKVGS-KALIVAPSYDD---NVALSARNIPGVKFL 176
              +           + + A    +  +          +      +  +           
Sbjct: 121 MKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAVYIHYSSGIVGGNITRSSPAA 180

Query: 177 AA---------------DGINVLDVLTYDKLIITKEAVQKVEEVFA 207
           +                   +   +                 ++  
Sbjct: 181 SPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTSDIEN 226


>SPBC2D10.08c [J] COG0088 Ribosomal protein L4
          Length = 261

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 13/189 (6%)

Query: 32  VLHEAVLMQRASLRRGTHKVKGRSEVRGGGRKPWKQKGTGRARQGSIRSPQWKGGGVVFG 91
           +LH AV+ +  + R+GT   K R+E+   GRK ++QKGTG AR G   SP  +GG    G
Sbjct: 37  ILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGAKSHG 96

Query: 92  PTPRSYSWKLPKKVRRLAIKSALSSKVIGNDIIVLDS-LTMNAPKTKEFAAILNNLKVGS 150
           P PR +S KL  +V  LA++ ALS++ I N++ +L++ + ++ PKT+    +L   K+G 
Sbjct: 97  PKPRDFSTKLQTQVYNLAMRIALSTRFINNELTILENPINLSQPKTRILLEVLKQHKLGH 156

Query: 151 ---KALIVAPS--YDD------NVALSARNI-PGVKFLAADGINVLDVLTYDKLIITKEA 198
              KAL V     ++D      N+ L++R +     F+      V D L + KL I  EA
Sbjct: 157 EYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCSFIPVGEFQVRDALKFGKLFIDSEA 216

Query: 199 VQKVEEVFA 207
           +  + E FA
Sbjct: 217 MSLIVEKFA 225


>YML025c [J] COG0088 Ribosomal protein L4
          Length = 286

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 32  VLHEAVLMQRASLRRGTHKVKGRSEVRGGGRKPWKQKGTGRARQGSIRSPQWKGGGVVFG 91
           +L  AV+ +  + R G     GRSE     RK   QKG+GRAR G   SP    GG    
Sbjct: 73  ILWRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVGDANSPTRHNGGRALA 132

Query: 92  PT-PRSYSWKLPKKVRRLAIKSALSSKVIGNDIIVL 126
            T P  Y+ +LP KV  +A  +ALS +     + V+
Sbjct: 133 RTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFVI 168


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,657,609
Number of extensions: 556632
Number of successful extensions: 10501
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10499
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 105
Effective length of database: 26,614,363
Effective search space: 2794508115
Effective search space used: 2794508115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)