BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0062.p
         (97 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1498 [C] COG0243 Anaerobic dehydrogenases, typically selenocy...    67   5e-12

>STM1498 [C] COG0243 Anaerobic dehydrogenases, typically
          selenocysteine-containing
          Length = 289

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 4/81 (4%), Positives = 14/81 (17%)

Query: 5  RDIIKRPVITERTSEYMSELKYAFEVDIRANKTEIKKAVEAIFKVKVVSVNTMRVPGKLK 64
            +I      ++     +    A        +        AI         +        
Sbjct: 9  DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68

Query: 65 RYGKYSGYTPEWKKAIVKLSQ 85
                    +++    +   
Sbjct: 69 TARPILDIALQYRFDSQQTFT 89


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,438,413
Number of extensions: 195841
Number of successful extensions: 497
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 1
Length of query: 97
Length of database: 38,378,431
Length adjustment: 66
Effective length of query: 31
Effective length of database: 30,766,387
Effective search space: 953757997
Effective search space used: 953757997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)