BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0060.p
         (92 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML0396 [I] COG1260 Myo-inositol-1-phosphate synthase                  154   2e-38
STM1496 [R] COG3302 DMSO reductase anchor subunit                     119   1e-27
YNR037c [J] COG0185 Ribosomal protein S19                              75   3e-14
SPAC1751.02c [J] COG0185 Ribosomal protein S19                         64   5e-11
MTH668 [G] COG0524 Sugar kinases, ribokinase family                    52   2e-07

>ML0396 [I] COG1260 Myo-inositol-1-phosphate synthase
          Length = 92

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 80/92 (86%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          MGRSLKKGPF+D +L+KKVE    A++K V+KTWSRRSTIFP F+G T  VYDGRKHVPV
Sbjct: 1  MGRSLKKGPFVDEHLMKKVEAQVNAERKSVIKTWSRRSTIFPNFVGLTIAVYDGRKHVPV 60

Query: 61 YVTEDMVGHKLGEFAPTRTYKGHAGDDKKTRR 92
          YV EDMVGHKLGEFAPTRTY+GHA DDKKTRR
Sbjct: 61 YVQEDMVGHKLGEFAPTRTYRGHAADDKKTRR 92


>STM1496 [R] COG3302 DMSO reductase anchor subunit
          Length = 346

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 4/84 (4%), Positives = 7/84 (8%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          M         ++   L                       +                  P 
Sbjct: 1  MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 61 YVTEDMVGHKLGEFAPTRTYKGHA 84
                              K   
Sbjct: 61 TQGLTETYVGNWLAKHGSREKLII 84


>YNR037c [J] COG0185 Ribosomal protein S19
          Length = 91

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 5/78 (6%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          + RS+ KGP I    +++     A  K   ++T +R +TI PQF+G  F +++G+++VP+
Sbjct: 8  LSRSVWKGPNIVPLPIRE-----AMTKGTPIRTNARAATILPQFVGLKFQIHNGKEYVPI 62

Query: 61 YVTEDMVGHKLGEFAPTR 78
           ++EDMVGHKLGEFAPTR
Sbjct: 63 EISEDMVGHKLGEFAPTR 80


>SPAC1751.02c [J] COG0185 Ribosomal protein S19
          Length = 108

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 2  GRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPVY 61
           RS+ KGP +  +    V         V +KT  R +TI P+ +G  F V++G+ +  V 
Sbjct: 24 ARSVWKGPNVVDF---GVNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVK 80

Query: 62 VTEDMVGHKLGEFAPTR 78
          +TEDM+GHKLGEFAPTR
Sbjct: 81 ITEDMIGHKLGEFAPTR 97


>MTH668 [G] COG0524 Sugar kinases, ribokinase family
          Length = 136

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 3   RSLKKGPFI--DGYLLKKVEELNAADK----KVVVKTWSRRSTIFPQFIGHTFGVYDGRK 56
           RSLK+G F+     +L+K+ ++    K      V++T  R   + P+ +G TFG+++G++
Sbjct: 34  RSLKRG-FLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKE 92

Query: 57  HVPVYVTEDMVGHKLGEFAPTRTYKGHA 84
            V V +  +M+G   GEFAPTR    H 
Sbjct: 93  FVEVKIQPEMIGCYFGEFAPTRKKVEHG 120


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,376,826
Number of extensions: 275183
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 35
Length of query: 92
Length of database: 38,378,431
Length adjustment: 62
Effective length of query: 30
Effective length of database: 31,227,723
Effective search space: 936831690
Effective search space used: 936831690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)