BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0059.p
         (110 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML0418 [C] COG0778 Nitroreductase                                     145   2e-35
STM1495 [R] COG3381 Uncharacterized component of anaerobic dehyd...   119   1e-27
YKL180w [J] COG0091 Ribosomal protein L22                              54   8e-08
YJL177w [J] COG0091 Ribosomal protein L22                              53   8e-08
MTH753 [O] COG1331 Highly conserved protein containing a thiored...    48   4e-06

>ML0418 [C] COG0778 Nitroreductase
          Length = 346

 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 4/108 (3%), Positives = 12/108 (11%)

Query: 3   AKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEHNY 62
             +      +                  +    +              +           
Sbjct: 7   PHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTE 66

Query: 63  SMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110
           +   N L             K   P           +      +    
Sbjct: 67  TYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREAL 114


>STM1495 [R] COG3381 Uncharacterized component of anaerobic dehydrogenases
          Length = 289

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 4/110 (3%), Positives = 21/110 (19%)

Query: 1   MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60
            +A      ++   +           +    + + +     +   +   L     +    
Sbjct: 29  AKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTF 88

Query: 61  NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110
             +          ++              +            +TL  +  
Sbjct: 89  TRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPL 138


>YKL180w [J] COG0091 Ribosomal protein L22
          Length = 311

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 2/86 (2%), Positives = 9/86 (10%), Gaps = 4/86 (4%)

Query: 25  RGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEHNYSMDVNSLFVSEVFVNQGPTMKR 84
             K              +    ++   +              +     +           
Sbjct: 72  ETKIQDPKDN---KKTINNPDHLKIYDSIKKVPNVKT-VEFSSKEAQLKELTKALGNNWN 127

Query: 85  FRPRAMGRASRINKRTSHITLVVSEK 110
                           +     V   
Sbjct: 128 LFKGDANPLYDAYIVEADKPANVKSV 153


>YJL177w [J] COG0091 Ribosomal protein L22
          Length = 311

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 2/86 (2%), Positives = 9/86 (10%), Gaps = 4/86 (4%)

Query: 25  RGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEHNYSMDVNSLFVSEVFVNQGPTMKR 84
             K              +    ++   +              +     +           
Sbjct: 72  ETKIQDPKDN---KKTINNPDHLKIYDSIKKVPNVKT-VEFSSKEAQLKELTKALGNNWN 127

Query: 85  FRPRAMGRASRINKRTSHITLVVSEK 110
                           +     V   
Sbjct: 128 LFKGDANPLYDAYIVEADKPANVKSV 153


>MTH753 [O] COG1331 Highly conserved protein containing a thioredoxin
           domain
          Length = 153

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 40  PKSASPVVEKLLNSAIANAEHNYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKR 99
           P  A+  + K+L +A ANAE+   +D   L +  +  ++GP ++ + PRA GRA+  N  
Sbjct: 84  PVKAAGQILKVLENAEANAEYK-GLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTP 142

Query: 100 TSHITLVVSE 109
           T+H+ +V+ E
Sbjct: 143 TTHVQIVLGE 152


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.128    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,669,944
Number of extensions: 226505
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 34
Length of query: 110
Length of database: 38,378,431
Length adjustment: 78
Effective length of query: 32
Effective length of database: 29,382,379
Effective search space: 940236128
Effective search space used: 940236128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)