BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0055.p
         (88 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML0394 [QR] COG0500 SAM-dependent methyltransferases                  116   7e-27
STM1491 [E] COG1125 ABC-type proline/glycine betaine transport s...    97   5e-21
MTH1238 [C] COG3261 Ni,Fe-hydrogenase III large subunit                52   3e-07
MTH1297 [C] COG1035 Coenzyme F420-reducing hydrogenase, beta sub...    52   3e-07
MTH1282_1 [R] COG0517 FOG: CBS domain                                  52   3e-07

>ML0394 [QR] COG0500 SAM-dependent methyltransferases
          Length = 86

 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 68/85 (80%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ER  RKV  G+VVSDKMDKTI + VET + H +Y KRI  +KK+KAHDE N AK GDIV+
Sbjct: 2  ERKQRKVYQGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKKYKAHDENNSAKTGDIVR 61

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          +METRPLSKDK +RLVE+VE AVII
Sbjct: 62 IMETRPLSKDKHFRLVEIVEEAVII 86


>STM1491 [E] COG1125 ABC-type proline/glycine betaine transport systems,
          ATPase components
          Length = 382

 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 4/77 (5%), Positives = 13/77 (16%)

Query: 7  ARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVKVME 66
           +   + K    K  + +                +                   I     
Sbjct: 2  IKLENLTKQFVQKKGQPLKAVDNVNLNVPEGEMCVLLGPSGCGKTTTLKMINRLIAPSSG 61

Query: 67 TRPLSKDKRWRLVEVVE 83
             ++ +    +  V  
Sbjct: 62 NILINGENTNDMDAVTL 78


>MTH1238 [C] COG3261 Ni,Fe-hydrogenase III large subunit
          Length = 268

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 0/74 (0%), Positives = 13/74 (17%), Gaps = 1/74 (1%)

Query: 9   KVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENV-AKIGDIVKVMET 67
            ++        + + ++   +   +       +      +    +            +  
Sbjct: 29  VLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILP 88

Query: 68  RPLSKDKRWRLVEV 81
              +          
Sbjct: 89  PLRTPHHPTGKPVT 102


>MTH1297 [C] COG1035 Coenzyme F420-reducing hydrogenase, beta subunit
          Length = 268

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 0/74 (0%), Positives = 13/74 (17%), Gaps = 1/74 (1%)

Query: 9   KVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENV-AKIGDIVKVMET 67
            ++        + + ++   +   +       +      +    +            +  
Sbjct: 29  VLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILP 88

Query: 68  RPLSKDKRWRLVEV 81
              +          
Sbjct: 89  PLRTPHHPTGKPVT 102


>MTH1282_1 [R] COG0517 FOG: CBS domain
          Length = 268

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 0/74 (0%), Positives = 13/74 (17%), Gaps = 1/74 (1%)

Query: 9   KVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENV-AKIGDIVKVMET 67
            ++        + + ++   +   +       +      +    +            +  
Sbjct: 29  VLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILP 88

Query: 68  RPLSKDKRWRLVEV 81
              +          
Sbjct: 89  PLRTPHHPTGKPVT 102


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,579,629
Number of extensions: 157689
Number of successful extensions: 534
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 43
Length of query: 88
Length of database: 38,378,431
Length adjustment: 58
Effective length of query: 30
Effective length of database: 31,689,059
Effective search space: 950671770
Effective search space used: 950671770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)