BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0054.p
         (122 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1490 [P] COG0038 Chloride channel protein EriC                     125   2e-29
SPBC887.07 [J] COG0093 Ribosomal protein L14                           68   3e-12
MTH1345 [C] COG2191 Formylmethanofuran dehydrogenase subunit E         53   1e-07
MTH1370 [V] COG1131 ABC-type multidrug transport system, ATPase ...    53   1e-07
MTH132 [P] COG0619 ABC-type cobalt transport system, permease co...    53   1e-07

>STM1490 [P] COG0038 Chloride channel protein EriC
          Length = 429

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 6/121 (4%), Positives = 20/121 (16%)

Query: 1   MIQPFTRLHVADNSGAKELMCIRVLGGTGRRTAAIGDLIVCSVKQATPGGXXXXXXXXXX 60
           M +      +        +  +  +       A    + +      +             
Sbjct: 1   MHRLHAYPDLRAMFRRLLIATLIGILAALAVAAFRHAMQLLEWIFLSNDTGSLVNAAEGL 60

Query: 61  XXXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDKDYMKIVSLAPE 120
                         +          + +         +         D     + SLA  
Sbjct: 61  SPWRRLITPALGGLAAGLLLWGWQKMNQQRPHAPTDYMEALQTDGQFDVGASLVKSLASL 120

Query: 121 V 121
           +
Sbjct: 121 L 121


>SPBC887.07 [J] COG0093 Ribosomal protein L14
          Length = 126

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 8   LHVADNSGAKELMCIRVLGGTGRRTAAIGDLIVCSVKQATPGGXXXXXXXXXXXXXXXXX 67
           L V DNSGA    CIRV+     + A++GD +V  VK+A  G                  
Sbjct: 8   LKVIDNSGATLAECIRVVRAG--KFASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAI 65

Query: 68  XXXXX------DGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDKDYMKIVSLAPEV 121
                      DG Y+ FD+NA V+V  +  P GTRI   VA ELR K + KI SLAP  
Sbjct: 66  IVRTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANELRTKHHTKIASLAPRT 125

Query: 122 I 122
           I
Sbjct: 126 I 126


>MTH1345 [C] COG2191 Formylmethanofuran dehydrogenase subunit E
          Length = 268

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 7/108 (6%), Positives = 14/108 (12%), Gaps = 7/108 (6%)

Query: 6   TRLHVADNSGAKELMCIRVLG--GTGRRTAA--IGDLIVCSVKQATPGGXXXXXXXXXXX 61
                      K ++  R     G  R        D     ++                 
Sbjct: 16  AETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDIL---TYMDTPQYLRR 72

Query: 62  XXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDK 109
                       G             K         +     ++    
Sbjct: 73  KVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLV 120


>MTH1370 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 268

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 7/108 (6%), Positives = 14/108 (12%), Gaps = 7/108 (6%)

Query: 6   TRLHVADNSGAKELMCIRVLG--GTGRRTAA--IGDLIVCSVKQATPGGXXXXXXXXXXX 61
                      K ++  R     G  R        D     ++                 
Sbjct: 16  AETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDIL---TYMDTPQYLRR 72

Query: 62  XXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDK 109
                       G             K         +     ++    
Sbjct: 73  KVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLV 120


>MTH132 [P] COG0619 ABC-type cobalt transport system, permease component
           CbiQ and related transporters
          Length = 268

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 7/108 (6%), Positives = 14/108 (12%), Gaps = 7/108 (6%)

Query: 6   TRLHVADNSGAKELMCIRVLG--GTGRRTAA--IGDLIVCSVKQATPGGXXXXXXXXXXX 61
                      K ++  R     G  R        D     ++                 
Sbjct: 16  AETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDIL---TYMDTPQYLRR 72

Query: 62  XXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDK 109
                       G             K         +     ++    
Sbjct: 73  KVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLV 120


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,311,776
Number of extensions: 192504
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 47
Length of query: 122
Length of database: 38,378,431
Length adjustment: 88
Effective length of query: 34
Effective length of database: 28,229,039
Effective search space: 959787326
Effective search space used: 959787326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)