BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0051.p
         (130 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA1087 [E] COG0421 Spermidine synthase                                63   1e-10
MTH1802 [R] COG1201 Lhr-like helicases                                 60   7e-10
MTH1859 [S] COG1873 Uncharacterized conserved protein                  60   7e-10
MTH1893 [P] COG0053 Predicted Co/Zn/Cd cation transporters             60   7e-10
MTH1883 [G] COG2074 2-phosphoglycerate kinase                          60   7e-10

>NMA1087 [E] COG0421 Spermidine synthase
          Length = 130

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 4/129 (3%)

Query: 3   DPIADMLTRIRNANTV-RHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRIF 61
           DP+A+ L+ I+NA  + +   V  PAS     +  +++  G+I D EF++D K GI  + 
Sbjct: 5   DPLANALSTIKNAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVT 64

Query: 62  LKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSKS 121
           L    N+   I     +       + K     +  G L   I++TS GVM+  EAR  K 
Sbjct: 65  LVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGAL---IVTTSSGVMSQYEARDKKI 121

Query: 122 GGEVVCYIW 130
           GG+++ Y++
Sbjct: 122 GGQLLAYVY 130


>MTH1802 [R] COG1201 Lhr-like helicases
          Length = 268

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 10/132 (7%), Positives = 24/132 (18%), Gaps = 6/132 (4%)

Query: 1   MSDPIADMLTRIRNANTVRHETVE--MPASTMKKQIADILKREGFIRDAEFVEDSKQGII 58
           +S  I D LT     +          +  +     +  I+                   +
Sbjct: 6   LSIFIPDSLTAETG-DLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYM 64

Query: 59  RIFLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQ 118
                       ++  LK +                     G      +   +       
Sbjct: 65  DTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKP---VTGEYRQGLTVKRVKKGTLVD 121

Query: 119 SKSGGEVVCYIW 130
             +    +C   
Sbjct: 122 IGADKLALCREK 133


>MTH1859 [S] COG1873 Uncharacterized conserved protein
          Length = 268

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 10/132 (7%), Positives = 24/132 (18%), Gaps = 6/132 (4%)

Query: 1   MSDPIADMLTRIRNANTVRHETVE--MPASTMKKQIADILKREGFIRDAEFVEDSKQGII 58
           +S  I D LT     +          +  +     +  I+                   +
Sbjct: 6   LSIFIPDSLTAETG-DLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYM 64

Query: 59  RIFLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQ 118
                       ++  LK +                     G      +   +       
Sbjct: 65  DTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKP---VTGEYRQGLTVKRVKKGTLVD 121

Query: 119 SKSGGEVVCYIW 130
             +    +C   
Sbjct: 122 IGADKLALCREK 133


>MTH1893 [P] COG0053 Predicted Co/Zn/Cd cation transporters
          Length = 268

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 10/132 (7%), Positives = 24/132 (18%), Gaps = 6/132 (4%)

Query: 1   MSDPIADMLTRIRNANTVRHETVE--MPASTMKKQIADILKREGFIRDAEFVEDSKQGII 58
           +S  I D LT     +          +  +     +  I+                   +
Sbjct: 6   LSIFIPDSLTAETG-DLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYM 64

Query: 59  RIFLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQ 118
                       ++  LK +                     G      +   +       
Sbjct: 65  DTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKP---VTGEYRQGLTVKRVKKGTLVD 121

Query: 119 SKSGGEVVCYIW 130
             +    +C   
Sbjct: 122 IGADKLALCREK 133


>MTH1883 [G] COG2074 2-phosphoglycerate kinase
          Length = 268

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 10/132 (7%), Positives = 24/132 (18%), Gaps = 6/132 (4%)

Query: 1   MSDPIADMLTRIRNANTVRHETVE--MPASTMKKQIADILKREGFIRDAEFVEDSKQGII 58
           +S  I D LT     +          +  +     +  I+                   +
Sbjct: 6   LSIFIPDSLTAETG-DLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYM 64

Query: 59  RIFLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQ 118
                       ++  LK +                     G      +   +       
Sbjct: 65  DTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKP---VTGEYRQGLTVKRVKKGTLVD 121

Query: 119 SKSGGEVVCYIW 130
             +    +C   
Sbjct: 122 IGADKLALCREK 133


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,862,917
Number of extensions: 302317
Number of successful extensions: 746
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 34
Length of query: 130
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 36
Effective length of database: 27,537,035
Effective search space: 991333260
Effective search space used: 991333260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)