BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0049.p
         (122 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML0414_1 [R] COG0637 Predicted phosphatase/phosphohexomutase          133   5e-32

>ML0414_1 [R] COG0637 Predicted phosphatase/phosphohexomutase
          Length = 346

 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 10/122 (8%), Positives = 19/122 (15%), Gaps = 7/122 (5%)

Query: 1   MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60
           M      + +     L +     G          +    +   +               +
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 61  KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120
                    G +    G        R K    + V           R     D       
Sbjct: 61  T-------QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREA 113

Query: 121 EF 122
             
Sbjct: 114 LH 115


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,316,349
Number of extensions: 307056
Number of successful extensions: 2038
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2037
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 38,378,431
Length adjustment: 88
Effective length of query: 34
Effective length of database: 28,229,039
Effective search space: 959787326
Effective search space used: 959787326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)