BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0040.p
         (37 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC2575 [J] COG0257 Ribosomal protein L36                               53   1e-07
PA4242 [J] COG0257 Ribosomal protein L36                               48   3e-06
NMB0164 [J] COG0257 Ribosomal protein L36                              48   4e-06
NMA0107 [J] COG0257 Ribosomal protein L36                              48   4e-06
YPO0230 [J] COG0257 Ribosomal protein L36                              47   8e-06

>VC2575 [J] COG0257 Ribosomal protein L36
          Length = 37

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 28/37 (75%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          MKVR SVK IC  CKVI+R G V VIC  PKHKQ+QG
Sbjct: 1  MKVRASVKKICRNCKVIKRNGVVRVICSEPKHKQRQG 37


>PA4242 [J] COG0257 Ribosomal protein L36
          Length = 38

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 1/38 (2%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICE-NPKHKQKQG 37
          MKVR SVK +C  CK+IRR G V VIC   P+HKQ+QG
Sbjct: 1  MKVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQRQG 38


>NMB0164 [J] COG0257 Ribosomal protein L36
          Length = 37

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 28/37 (75%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          M+V+PSVK IC  CK+IRR   V VIC + +HKQ+QG
Sbjct: 1  MRVQPSVKKICRNCKIIRRNRVVRVICTDLRHKQRQG 37


>NMA0107 [J] COG0257 Ribosomal protein L36
          Length = 255

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 3/37 (8%), Positives = 4/37 (10%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          MK    +               V              
Sbjct: 1  MKNLFDLTGKVAIVTGASSGLGVEFARALANQGANIA 37


>YPO0230 [J] COG0257 Ribosomal protein L36
          Length = 38

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICE-NPKHKQKQG 37
          MKVR SVK +C  CK+++R G V VIC   PKHKQ+QG
Sbjct: 1  MKVRASVKKLCRNCKIVKRNGVVRVICSAEPKHKQRQG 38


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 2,290,497
Number of extensions: 29260
Number of successful extensions: 73
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 6
Length of query: 37
Length of database: 38,378,431
Length adjustment: 11
Effective length of query: 26
Effective length of database: 37,109,757
Effective search space: 964853682
Effective search space used: 964853682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)