BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0039.p
         (122 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1475 [TK] COG0745 Response regulators consisting of a CheY-li...   150   3e-37
SPCC1795.07 [J] COG0099 Ribosomal protein S13                          91   4e-19
MTH343 [R] COG1216 Predicted glycosyltransferases                      71   5e-13
MTH348 [R] COG1216 Predicted glycosyltransferases                      71   5e-13
MTH345 [O] COG1180 Pyruvate-formate lyase-activating enzyme            71   5e-13

>STM1475 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 243

 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 11/123 (8%), Positives = 29/123 (23%), Gaps = 1/123 (0%)

Query: 1   MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60
           M RI  V+   +    IA            +   +     + T   DL   ++    +  
Sbjct: 1   MNRIVFVEDDAEVGSLIAAYLAKHDIDVIVEPRGDRAEDLILTTQPDLVLLDIMLPGKDG 60

Query: 61  DKSVKVEGDLRREISLNIKRLTEIGCYRGVRHRRGLPVRGQRTKTNARTRKGPRRT-VAN 119
               +      +   + +  L     +             + T       +       + 
Sbjct: 61  MTICRDLRHRWQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQSE 120

Query: 120 KKK 122
           + +
Sbjct: 121 QTQ 123


>SPCC1795.07 [J] COG0099 Ribosomal protein S13
          Length = 77

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 0/119 (0%), Positives = 0/119 (0%), Gaps = 5/119 (4%)

Query: 1   MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60
           M R               +  +    ++ + +      I +            ++     
Sbjct: 1   MRRATRSGAAFAYVDGKRMREVSLDPESLTPRDREFLWIGLLEPDEAELRVLQTQFDPHP 60

Query: 61  DKSVKVEGDLRREISLNIKRLTEIGCYRGVRHRRGLPVRGQRTKTNARTRKG----PRR 115
                                                                      
Sbjct: 61  L-                                                          118


>MTH343 [R] COG1216 Predicted glycosyltransferases
          Length = 254

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 9/130 (6%), Positives = 20/130 (15%), Gaps = 22/130 (16%)

Query: 1   MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60
           +   A  ++   +                S +         +      T  +       +
Sbjct: 8   LEGEAIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGV 67

Query: 61  DKSVK----------------------VEGDLRREISLNIKRLTEIGCYRGVRHRRGLPV 98
               +                             E     +R   I        R+ L  
Sbjct: 68  AMVPRIKNGSRAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVE 127

Query: 99  RGQRTKTNAR 108
                  N  
Sbjct: 128 ARGHRIENVP 137


>MTH348 [R] COG1216 Predicted glycosyltransferases
          Length = 254

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 9/130 (6%), Positives = 20/130 (15%), Gaps = 22/130 (16%)

Query: 1   MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60
           +   A  ++   +                S +         +      T  +       +
Sbjct: 8   LEGEAIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGV 67

Query: 61  DKSVK----------------------VEGDLRREISLNIKRLTEIGCYRGVRHRRGLPV 98
               +                             E     +R   I        R+ L  
Sbjct: 68  AMVPRIKNGSRAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVE 127

Query: 99  RGQRTKTNAR 108
                  N  
Sbjct: 128 ARGHRIENVP 137


>MTH345 [O] COG1180 Pyruvate-formate lyase-activating enzyme
          Length = 254

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 9/130 (6%), Positives = 20/130 (15%), Gaps = 22/130 (16%)

Query: 1   MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60
           +   A  ++   +                S +         +      T  +       +
Sbjct: 8   LEGEAIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGV 67

Query: 61  DKSVK----------------------VEGDLRREISLNIKRLTEIGCYRGVRHRRGLPV 98
               +                             E     +R   I        R+ L  
Sbjct: 68  AMVPRIKNGSRAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVE 127

Query: 99  RGQRTKTNAR 108
                  N  
Sbjct: 128 ARGHRIENVP 137


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.137    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,978,414
Number of extensions: 297888
Number of successful extensions: 877
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 865
Number of HSP's successfully gapped: 13
Length of query: 122
Length of database: 38,378,431
Length adjustment: 88
Effective length of query: 34
Effective length of database: 28,229,039
Effective search space: 959787326
Effective search space used: 959787326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)