BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0033.p
         (145 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.04 [J] COG0102 Ribosomal protein L13                         102   2e-22
YOR150w [J] COG0102 Ribosomal protein L13                              99   2e-21

>SPBC16G5.04 [J] COG0102 Ribosomal protein L13
          Length = 157

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 1/122 (0%)

Query: 16  WHIIDAEGKTLGRLASEAAALIRGKHKPQFTPHVDTGDFVIVINAEKIHLTGKKLQNKKY 75
           WH + A+   LGRLAS+ A  + GKHKP + P  D GD V+V +  +I ++G+KL+N KY
Sbjct: 16  WHHVSAKNVPLGRLASQIATTLMGKHKPIYHPAADCGDVVVVTDCSEIGISGRKLENHKY 75

Query: 76  YRHSMHPGGLKVTVAEDLLKTKPER-VIESAVHGMIPKTRQGDHMKLRLKVYAGAEHPHA 134
           Y HS  PG LK    E++   +  + ++  AV GM+P+ +  D    RL +Y GAEHP+ 
Sbjct: 76  YSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIYDGAEHPYK 135

Query: 135 AQ 136
           A 
Sbjct: 136 AN 137


>YOR150w [J] COG0102 Ribosomal protein L13
          Length = 163

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 14  RNWHIIDA--EGKTLGRLASEAAALIRGKHKPQFTPHVDTGDFVIVINAEKIHLTGKKLQ 71
           R WH +D   + +TLGRLAS  A  + G+HKP + P  D GD+V+V N +KI +TGKK +
Sbjct: 14  RLWHHVDVARDKRTLGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFE 73

Query: 72  NKKYYRHSMHPGGLKVTVAEDLLKTKP-ERVIESAVHGMIPKTRQGDHMKLRLKVYAGAE 130
            K Y+ HS  PG LK+     ++  K    +++ AV GM+PK +       RLKV+ G+E
Sbjct: 74  QKTYWSHSGRPGQLKLQTMNKVVADKGFGEILKKAVSGMLPKNKLRKQRLDRLKVFDGSE 133

Query: 131 HPH 133
           +P+
Sbjct: 134 NPY 136


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,437,964
Number of extensions: 473894
Number of successful extensions: 702
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 49
Effective length of database: 27,306,367
Effective search space: 1338011983
Effective search space used: 1338011983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)