BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0032.p
         (130 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YBR146w_2 [J] COG0103 Ribosomal protein S9                             87   5e-18
SPAC29A4.03c [J] COG0103 Ribosomal protein S9                          77   6e-15
YMR143w [J] COG0103 Ribosomal protein S9                               47   5e-06
YDL083c [J] COG0103 Ribosomal protein S9                               47   5e-06

>YBR146w_2 [J] COG0103 Ribosomal protein S9
          Length = 138

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 76/123 (61%)

Query: 8   GTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGNYDVIVLA 67
             G+RK S A+V +V G G I++N R++++YF     +  +  PL + E++G Y++    
Sbjct: 16  AVGKRKSSTAKVFVVRGTGEILVNGRQLNDYFLKMKDRESIMYPLQVIESVGKYNIFATT 75

Query: 68  HGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKAARRAPQF 127
            GGG +GQA +I H IA+AL+  +P  +  L KAG LTRD R  ERKK G K AR+ P +
Sbjct: 76  SGGGPTGQAESIMHAIAKALVVFNPLLKSRLHKAGVLTRDYRHVERKKPGKKKARKMPTW 135

Query: 128 SKR 130
            KR
Sbjct: 136 VKR 138


>SPAC29A4.03c [J] COG0103 Ribosomal protein S9
          Length = 132

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 63/121 (52%)

Query: 10  GRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGNYDVIVLAHG 69
           G+RK S A V+++PG G+  +N    D YF     +     PL     L NY+V    HG
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRKHAVYPLAACNRLTNYNVWATVHG 71

Query: 70  GGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKAARRAPQFSK 129
           GG +GQ+GA+   I+++L+  +P  +  +K    +  D R  ERKK G   AR+   + K
Sbjct: 72  GGPTGQSGAVHAAISKSLILQEPSLKQVIKDTHCVLNDKRKVERKKTGQPKARKKYTWVK 131

Query: 130 R 130
           R
Sbjct: 132 R 132


>YMR143w [J] COG0103 Ribosomal protein S9
          Length = 143

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLT--ETL 58
           +  VQ +G  +   +VA V+   G+G I +N   +      E L+  V +PL L   +  
Sbjct: 4   VPSVQTFGKKKSATAVAHVK--AGKGLIKVNGSPIT-LVEPEILRFKVYEPLLLVGLDKF 60

Query: 59  GNYDVIVLAHGGGISGQAGAIRHGIARALLK-----VDPEYRGSLKKA------GFLTRD 107
            N D+ V   GGG   Q  AIR  IA+ L+      VD + +  LKKA        L  D
Sbjct: 61  SNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIAD 120

Query: 108 PRMKERKKYGLKAARRAPQFSKR 130
            R  E KK+G K AR   Q S R
Sbjct: 121 SRRPEPKKFGGKGARSRFQKSYR 143


>YDL083c [J] COG0103 Ribosomal protein S9
          Length = 143

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLT--ETL 58
           +  VQ +G  +   +VA V+   G+G I +N   +      E L+  V +PL L   +  
Sbjct: 4   VPSVQTFGKKKSATAVAHVK--AGKGLIKVNGSPIT-LVEPEILRFKVYEPLLLVGLDKF 60

Query: 59  GNYDVIVLAHGGGISGQAGAIRHGIARALLK-----VDPEYRGSLKKA------GFLTRD 107
            N D+ V   GGG   Q  AIR  IA+ L+      VD + +  LKKA        L  D
Sbjct: 61  SNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIAD 120

Query: 108 PRMKERKKYGLKAARRAPQFSKR 130
            R  E KK+G K AR   Q S R
Sbjct: 121 SRRPEPKKFGGKGARSRFQKSYR 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,754,273
Number of extensions: 391838
Number of successful extensions: 1790
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1792
Number of HSP's successfully gapped: 6
Length of query: 130
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 36
Effective length of database: 27,537,035
Effective search space: 991333260
Effective search space used: 991333260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)