BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0009.p (372 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ybaL [D] COG0489 ATPases involved in chromosome partitioning 343 2e-94 BH0240 [D] COG0489 ATPases involved in chromosome partitioning 335 1e-91 SA1969 [D] COG0489 ATPases involved in chromosome partitioning 328 7e-90 BMEI1887 [D] COG0489 ATPases involved in chromosome partitioning 190 3e-48 alr0652 [D] COG0489 ATPases involved in chromosome partitioning 186 4e-47 >BS_ybaL [D] COG0489 ATPases involved in chromosome partitioning Length = 352 Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 173/368 (47%), Positives = 242/368 (65%), Gaps = 23/368 (6%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDR--ISLSLVCLDTDEKSRMELEQ 61 M+ +++++L+ + +P + L EL +++I +K ++ IS+ + T +M+++Q Sbjct: 1 MIREDEVRKLVGEMREPFLQRPLGELDAVKEIKIKPEKRHISVKVALAKTGTAEQMQIQQ 60 Query: 62 KVRDLLTEGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGGALKGHAAGLEGHELIN 121 ++ ++L GA + +R + + + R S E K L+N Sbjct: 61 EIVNVLKGAGAETVGLRFEELPEETVAKFRAPSAEKK-------------------TLLN 101 Query: 122 KDSGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPI 181 D+ F+A+A NLA++LAR GKKVGLIDADIYGFS+PDMMGI P Sbjct: 102 MDNPPVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRPT 161 Query: 182 VEEGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLLDLP 241 +E ++PVERFGVKVMSMGFF+ EN+PV+WRGPMLGKML FF +V WGE+DY++LDLP Sbjct: 162 IEGEKLLPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDYIVLDLP 221 Query: 242 PGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYECS 301 PGTGDVALDVH MLP KEIIV+TPH TAAFVAARAGSMA++TDHE++GVIENMAYYE + Sbjct: 222 PGTGDVALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIENMAYYESA 281 Query: 302 SCGKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFAE 361 G+++Y+FG+GGG +LAE L+ LL +IPL PD + F+PSVY +++ + Sbjct: 282 KTGEREYVFGKGGGDKLAEELNVPLLGRIPLKQPD--WDKDQFAPSVYDENHPIGEIYQD 339 Query: 362 IADKLIAN 369 IA K+ A Sbjct: 340 IAKKIDAK 347 >BH0240 [D] COG0489 ATPases involved in chromosome partitioning Length = 350 Score = 335 bits (858), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 183/364 (50%), Positives = 244/364 (67%), Gaps = 18/364 (4%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDRISLSLVCLDTDEKSRMELEQKV 63 MLT E++ L + D + KS++E IR++ + +S+ + T + +ME++Q++ Sbjct: 1 MLTEEKVLAALNRVKDRDLNKSIVETGGIRELKISGANVSVKVALAQTGTREQMEIQQEI 60 Query: 64 RDLLTEGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGGALKGHAAGLEGHELINKD 123 ++L GA ++ +R D+ E E+ G L G L++ + Sbjct: 61 VNVLKGEGAESVGLRFDQL--------------DETEIEKLGGLPKQE--FHGPPLLHPN 104 Query: 124 SGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPIVE 183 + FIA+ NLA LAR GKKVG+IDADIYGFS+PDMMGIEE P V Sbjct: 105 TSTTFIAVTSGKGGVGKSTVSVNLATTLARLGKKVGIIDADIYGFSVPDMMGIEERPKVV 164 Query: 184 EGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLLDLPPG 243 I PVERFGVKV+SMGFF+ +N+PVIWRGPMLGKML FF++V WG+LDY++LDLPPG Sbjct: 165 GEQIFPVERFGVKVISMGFFVEDNAPVIWRGPMLGKMLNNFFAEVEWGDLDYLILDLPPG 224 Query: 244 TGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYECSSC 303 TGDVALD+H MLPHSKEI+VTTPHATAAFVAARAG+MAL+T HEI+GV+ENMAY+E Sbjct: 225 TGDVALDIHTMLPHSKEILVTTPHATAAFVAARAGAMALKTHHEIIGVVENMAYFESKIT 284 Query: 304 GKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFAEIA 363 G+K+Y+FG+GGG RLAE L TE+L +IPLG P+ I E DF+PSVY A +++ IA Sbjct: 285 GEKEYVFGQGGGERLAEELKTEVLGRIPLGQPE--IDEDDFAPSVYGATHPIGEIYTAIA 342 Query: 364 DKLI 367 ++I Sbjct: 343 KRVI 346 >SA1969 [D] COG0489 ATPases involved in chromosome partitioning Length = 354 Score = 328 bits (842), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 178/367 (48%), Positives = 250/367 (68%), Gaps = 19/367 (5%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDR--ISLSLVCLDTDEKSRMELEQ 61 MLT +Q++EL+ + DP L E + I ++ +KE++ +S+ L +++L+ Sbjct: 1 MLTVDQVKELVGEIKDPIIDVPLKETEGIVEVSIKEEKEHVSVKLAMAQLGGAPQLDLQM 60 Query: 62 KVRDLLTEGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGGALKGHAAGLEGHELIN 121 V + L E GA + IR + + + + + E+KP+ +G L++ Sbjct: 61 AVVNALKENGAKTVGIRFETLPEEKVNQFKPKE-ENKPKTIEG--------------LLS 105 Query: 122 KDSGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPI 181 +++ V FIAIA NLAVALAR+GKKVGL+DADIYGFS+PDMMGI+E P Sbjct: 106 QNNPVEFIAIASGKGGVGKSTVAVNLAVALAREGKKVGLVDADIYGFSVPDMMGIDEKPG 165 Query: 182 VEEGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLLDLP 241 ++ +IPVER GVKV+SM FF+ EN+PVIWRGPMLGKML FF++V WG+++Y++LDLP Sbjct: 166 IKGKEVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVKWGDIEYLILDLP 225 Query: 242 PGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYECS 301 PGTGDVALDVH MLP SKEIIVTTPH TAAFVAARAG+MA TDH ILGVIENM+Y+E Sbjct: 226 PGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVIENMSYFESK 285 Query: 302 SCGKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFAE 361 G K+Y+FG+GGG +LA+ L+T+LL ++PL P + DF+PS+Y+++ ++++ Sbjct: 286 ETGNKEYVFGKGGGTKLADELNTQLLGELPLEQPS--WNPKDFAPSIYQSDDRLGKIYSS 343 Query: 362 IADKLIA 368 IA K+IA Sbjct: 344 IAQKVIA 350 >BMEI1887 [D] COG0489 ATPases involved in chromosome partitioning Length = 394 Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/385 (30%), Positives = 193/385 (50%), Gaps = 32/385 (8%) Query: 2 LSMLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDRISLSLVC----LDTDEKSRM 57 ++ +TREQ+ E L+ +T P+ ++ L L+ DI + + ++ S+ + E R+ Sbjct: 8 MAGVTREQVLERLKTVTGPDFKSDVVSLGLVSDIFIADGKVFFSITVPAERAEALEPMRL 67 Query: 58 ELEQKVRDL---------LT---EGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGG 105 E+ V+D+ LT +GG + + +P P Sbjct: 68 AAEKVVKDIPGITGALVTLTAEKKGGRTSDDAPPPPRPQARPAAASQHRHPPQPRPAAKP 127 Query: 106 ALKGHAAGLEGHELINKDSGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADI 165 + G A IA+A NLA+ LA G K G++DADI Sbjct: 128 GVPGVGA---------------IIAVASGKGGVGKSTTAVNLALGLAANGLKAGILDADI 172 Query: 166 YGFSIPDMMGIEEGPIVEEGTII-PVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQF 224 YG S+P ++G+ P EG I+ P+E +G+KVMSMGF + E +P+IWRGPM+ L Q Sbjct: 173 YGPSMPRLLGLSGRPETVEGRILKPMENYGIKVMSMGFMVDEETPMIWRGPMVMSALTQM 232 Query: 225 FSDVGWGELDYMLLDLPPGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQT 284 +V WGELD +++D+PPGTGD L + Q +P + ++V+TP A A + +M + Sbjct: 233 LREVAWGELDVLVVDMPPGTGDAQLTMAQQVPLAGAVVVSTPQDLALIDARKGLNMFRKV 292 Query: 285 DHEILGVIENMAYYECSSCGKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDF 344 D +LG++ENM+Y+ G + IFG GG R AE L+ L ++PL S+ Sbjct: 293 DVPLLGIVENMSYFIAPDTGTRYDIFGHGGARREAERLNVPFLGEVPLHMDVRAYSDNGT 352 Query: 345 SPSVYKAETATAQLFAEIADKLIAN 369 +V + ++ A+++ +IA K+ N Sbjct: 353 PITVKEPDSEHAKIYRDIARKVWEN 377 >alr0652 [D] COG0489 ATPases involved in chromosome partitioning Length = 359 Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 18/335 (5%), Positives = 53/335 (15%), Gaps = 32/335 (9%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDRISLSLVCLDTDEKSRMELEQKV 63 + L L ++ + + + L Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--------ADAF 55 Query: 64 RDLLTEGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGGALKGHAAGLEGHELINKD 123 E ++ + Q + Sbjct: 56 GVARLEEALRLRA-GGITKPVLLLEG-FFDARDLPTISAQHFH-----TAVH-------- 100 Query: 124 SGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPIV- 182 N +A + + V A+ + + + + + Sbjct: 101 ---NEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIV 157 Query: 183 ---EEGTII-PVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLL 238 + F + + Q D + + Sbjct: 158 SHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGV 217 Query: 239 DLPPGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYY 298 A Q + ++ A G+ + D + V Sbjct: 218 SPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDG 277 Query: 299 ECSSCGKKDY-IFGRGGGARLAETLHTELLAQIPL 332 + + + + + Sbjct: 278 YPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGP 312 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 27,851,825 Number of extensions: 1160239 Number of successful extensions: 2111 Number of sequences better than 1.0e-05: 34 Number of HSP's gapped: 2060 Number of HSP's successfully gapped: 34 Length of query: 372 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 264 Effective length of database: 25,922,359 Effective search space: 6843502776 Effective search space used: 6843502776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)