BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0004.p
         (149 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0243 [G] COG0726 Predicted xylanase/chitin deacetylase              138   3e-33
BS_ybaN [G] COG0726 Predicted xylanase/chitin deacetylase             117   5e-27
L81453_2 [G] COG0726 Predicted xylanase/chitin deacetylase             85   5e-17
BH1917 [G] COG0726 Predicted xylanase/chitin deacetylase               84   1e-16
all4345 [G] COG0726 Predicted xylanase/chitin deacetylase              80   2e-15

>BH0243 [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 253

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 90/133 (67%)

Query: 2   NYSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTD 61
           NY+   +E+I+  +  +  V++ +TG++P L+R PNGDFDKRVL +A    Y V+ W  +
Sbjct: 121 NYTTWEDEKIRKDLRQSQQVISSITGEKPTLLRPPNGDFDKRVLNLAESYDYTVVHWSIN 180

Query: 62  SLDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVSE 121
           S D++N GVD IVR+V     PGDIVL+HASDS KQTH+ALP IID L+ +GY F ++ E
Sbjct: 181 SRDYENPGVDAIVRQVVDHISPGDIVLMHASDSAKQTHKALPIIIDQLKGKGYHFRSIEE 240

Query: 122 LISQGSAEGKEVR 134
           L++       E++
Sbjct: 241 LMADAHPTHDEIK 253


>BS_ybaN [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 125

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 0/133 (0%), Positives = 0/133 (0%)

Query: 2   NYSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTD 61
                                                                       
Sbjct: 122                                                              181

Query: 62  SLDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVSE 121
                                                                       
Sbjct: 182                                                              241

Query: 122 LISQGSAEGKEVR 134
                        
Sbjct: 242               254


>L81453_2 [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 222

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 79/130 (60%), Gaps = 7/130 (5%)

Query: 6   LSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTDSLDW 65
           LS ++ K +I +A+ ++ ++TGK   L R P G ++K VL   +      + W  D+ DW
Sbjct: 94  LSPDQQKQEIESANQLINKITGKNVTLFRPPYGSYNKSVL---SQTNLSAVNWTVDTNDW 150

Query: 66  KNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVSELIS- 124
           +      +V+ V++ AH G I+L+H  D  + + +A+PQII NL++QGY FVTVS L++ 
Sbjct: 151 RYRTSAPVVQNVSTYAHDGAIILMH--DIHQWSVDAVPQIIKNLKAQGYTFVTVSTLLTV 208

Query: 125 -QGSAEGKEV 133
             G A+ ++V
Sbjct: 209 QDGGAKAQQV 218


>BH1917 [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 276

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 4/117 (3%)

Query: 11  IKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTDSLDWKNIGV 70
           ++ ++     ++  L G  P   R P G     +++   +L   V+ W  D+LDW+    
Sbjct: 154 LEQEVLQTEAIIQNLVGYRPRFFRAPYGFLYNELVEKLAELNNTVVAWSIDTLDWRERPA 213

Query: 71  DNIVRRVTSKAHPGDIVLLH----ASDSCKQTHEALPQIIDNLRSQGYEFVTVSELI 123
           + +   V S A PG IVL+H    A     QT EAL QII  L+ QG+EFVTVSELI
Sbjct: 214 EEVAFSVISSAQPGSIVLMHDGAEADGDRTQTIEALRQIIPTLQEQGFEFVTVSELI 270


>all4345 [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 305

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 3   YSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTDS 62
           Y  ++ +    ++     ++ ++TG + +L R P G  +  ++  A +  Y VI W +DS
Sbjct: 170 YHFMNPQVAAYEVNNTTNLIYQITGVKTDLFRPPGGMMNNGLVSYARNNKYAVIMWSSDS 229

Query: 63  LDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCK-QTHEALPQIIDNLRSQGYEFVTVSE 121
           +D+    V  ++  V   A PG IVL+H     + QT +ALP+II   R QGY FVTV E
Sbjct: 230 IDYSRPSVPRLINNVFRLAKPGGIVLMHDGGGNRTQTVQALPEIIARFRKQGYSFVTVPE 289

Query: 122 LI 123
           L+
Sbjct: 290 LL 291


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,629,330
Number of extensions: 416086
Number of successful extensions: 872
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 25
Length of query: 149
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 52
Effective length of database: 27,191,033
Effective search space: 1413933716
Effective search space used: 1413933716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)