BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0012.p (279 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 231 8e-61 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 207 1e-53 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 205 5e-53 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 204 1e-52 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 200 2e-51 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 231 bits (590), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 119/256 (46%), Positives = 168/256 (65%), Gaps = 6/256 (2%) Query: 25 IVLIPLLWTVSTSLKSPAEVF--GTSFFPQSWLWSNYADAVKAIP---FFLYLRNTIVIL 79 I++ P+LW V++SLK +E+F +S P ++WSNY D F +Y +N+ +I Sbjct: 23 IMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIIT 82 Query: 80 VPVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTNS 139 V+IG + +S++ AYGFAR F+ +K LF L+AT+MLP Q+TLIP +ILF G N+ Sbjct: 83 TSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNT 142 Query: 140 FLPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLIA 199 F PLI+PAF GG F IFL+ QF+RGIPRELDE+A++DG + + +F R++LPL K L+ Sbjct: 143 FYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVT 202 Query: 200 VSIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMF-KGLYNVEWNMLMAATILIMLPALI 258 V+IF FM W+DF PLIYLN + T+ALGL F W L+A + L +LP I Sbjct: 203 VAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFI 262 Query: 259 LFFIAQKYFIEGISIS 274 +F Q+Y +EGIS + Sbjct: 263 IFLFFQRYLVEGISTT 278 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/255 (40%), Positives = 162/255 (63%), Gaps = 1/255 (0%) Query: 21 GGSAIVLIPLLWTVSTSLKSPAEVFGTSFFPQSWLWSNYADAVKAIPFFLYLRNTIVILV 80 G + L P++W +S SLK+ EV + FP WSNY + +PF+ NT++ Sbjct: 24 GIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAG 83 Query: 81 PVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTNSF 140 V G VF +L+ Y FAR FRGR TLF++ L+T+M+P VT+IP FIL + G ++ Sbjct: 84 CVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIVGWVDTP 143 Query: 141 LPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLIAV 200 +I+P FG AF +L+RQF R +P +L+E+A++DG + WQI+ RI+LP S+ ++ + Sbjct: 144 WAMIVPGLFGS-AFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVL 202 Query: 201 SIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALILF 260 + T++ VWNDF PL+ + N TL LGL +G Y W +LMAA++L+++P +IL+ Sbjct: 203 GVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILY 262 Query: 261 FIAQKYFIEGISISS 275 +AQ+ F+ GI+++ Sbjct: 263 AVAQRSFVRGIAVTG 277 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 102/255 (40%), Positives = 161/255 (63%), Gaps = 1/255 (0%) Query: 21 GGSAIVLIPLLWTVSTSLKSPAEVFGTSFFPQSWLWSNYADAVKAIPFFLYLRNTIVILV 80 G + L P++W +S SLK+ EV + FP WSNY + +PF+ NT++ Sbjct: 24 GIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAG 83 Query: 81 PVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTNSF 140 V G VF +L+ Y FAR FRGR TLF++ L+T+M+P VT+IP IL + G ++ Sbjct: 84 CVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTP 143 Query: 141 LPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLIAV 200 +I+P FG AF +L+RQF R +P +L+E+A++DG + WQI+ RI+LP S+ ++ + Sbjct: 144 WAMIVPGLFGS-AFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVL 202 Query: 201 SIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALILF 260 + T++ VWNDF PL+ + N TL LGL +G Y W +LMAA++L+++P +IL+ Sbjct: 203 GVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILY 262 Query: 261 FIAQKYFIEGISISS 275 +AQ+ F+ GI+++ Sbjct: 263 AVAQRSFVRGIAVTG 277 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 159/254 (62%), Gaps = 1/254 (0%) Query: 21 GGSAIVLIPLLWTVSTSLKSPAEVFGTSFFPQSWLWSNYADAVKAIPFFLYLRNTIVILV 80 G + L P++W +S SLK E+ + P WSNY + IPF+ NT++ Sbjct: 27 GIAWCALFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTEVFDLIPFWRMFFNTVLYAG 86 Query: 81 PVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTNSF 140 V +G VF +L+ Y FAR FRGR LF++ L T+M+P VT+IP FIL + G T++ Sbjct: 87 YVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTP 146 Query: 141 LPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLIAV 200 +I+P FG AF +L+RQF R +P +L+E+A++DG + WQI+ R++LP +K + + Sbjct: 147 WAMIVPGLFGS-AFGTYLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVL 205 Query: 201 SIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALILF 260 ++ T++ VWNDF PL+ + N TL LGL +G Y W ++MA ++LI+LP +I++ Sbjct: 206 AVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMRGEYGTCWPVIMATSMLIILPLVIIY 265 Query: 261 FIAQKYFIEGISIS 274 IAQ+ F+ GI+++ Sbjct: 266 TIAQRAFVRGITVT 279 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/255 (41%), Positives = 160/255 (62%), Gaps = 4/255 (1%) Query: 22 GSAIVLIPLLWTVSTSLKSPAE--VFGTSFFPQSWLWSNYADAVKAIPFFLYLRNTIVIL 79 G I+L+P +W +ST+ K+ A V F P+ +N+ + P +L N++V+ Sbjct: 26 GGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVA 85 Query: 80 VPVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTNS 139 V +G + +++AY FAR F GR LFL+ LATMM+P+QVT+IP FIL K+ G +S Sbjct: 86 VVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDS 145 Query: 140 FLPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLIA 199 + LI+PA F F FL+RQ GIP+EL+E+A +DGAN + IF +++LPL+K Sbjct: 146 YAGLIVPALFS--VFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFAT 203 Query: 200 VSIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALIL 259 + I TFM WN + PLI +S E TL LGLS+ +G Y + ++MA ++ ++P L + Sbjct: 204 LGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAV 263 Query: 260 FFIAQKYFIEGISIS 274 + AQKYFI+G+++S Sbjct: 264 YLFAQKYFIQGMAMS 278 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,277,868 Number of extensions: 706303 Number of successful extensions: 2603 Number of sequences better than 1.0e-05: 179 Number of HSP's gapped: 2386 Number of HSP's successfully gapped: 179 Length of query: 279 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 174 Effective length of database: 26,268,361 Effective search space: 4570694814 Effective search space used: 4570694814 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)