BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0011.p (298 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 239 4e-63 BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 231 7e-61 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 210 2e-54 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 209 4e-54 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 207 1e-53 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 6/296 (2%) Query: 5 KSDRAGYWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIF-HD 63 K GY I PWLLG +GPMI SL SF+ +D+++ S +VGL N+ IF D Sbjct: 27 KESFVGYAMISPWLLGFFGLVIGPMIASLYFSFTDYDMLS---SANWVGLQNYIHIFTSD 83 Query: 64 ELFYQSLKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIP-AVATSM 122 F QSLKVT IF V PL ++ +A+L N +G F I+++PS+I +VA ++ Sbjct: 84 PRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGRKGSGLFSTIYYIPSIIGGSVAVAV 143 Query: 123 MWVMIFNPEYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQGV 182 +W +F G +N L FG G W+ YAL LI++ +W G+ +II+L+GL+ + Sbjct: 144 VWKQLFGSR-GAVNSFLELFGFSGVNWIGSTDYALSILILLVVWQFGSPMIIFLAGLRQI 202 Query: 183 PEDLYEAGELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNS 242 P++LYEA +DGA FR+FFSITLP++TP +FFNLIM IGGF FTQA+++T GGPL+S Sbjct: 203 PQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQTIGGFMTFTQAYLITGGGPLDS 262 Query: 243 TLFYNLYLYNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGDDQQD 298 TLFY +YLY AF MGYASA++W +SSS+WV+Y+ + + Sbjct: 263 TLFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGITFVFFKSSSYWVHYESEGGRS 318 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 195/297 (65%), Gaps = 9/297 (3%) Query: 5 KSDRAGYWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFH-D 63 K + AGY FI P+++G + FT+ PM SL LSF+ +D+ T + +++GLDNFK +F D Sbjct: 17 KDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFT---APKWIGLDNFKEMFTGD 73 Query: 64 ELFYQSLKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIP-AVATSM 122 E ++QSLKVTF + L VPL ++ IAV+LN ++G +R +F++PS+I +VA ++ Sbjct: 74 EKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGSVAVAI 133 Query: 123 MWVMIFNPEYGILNQALSWFGI-QGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQG 181 MW IF + G++N L + GI Q W Q+P+ AL LI++ +W G++++I+L+GL+ Sbjct: 134 MWRNIFGND-GVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQFGSSMLIFLAGLKN 192 Query: 182 VPEDLYEAGELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTN--GGP 239 +P EA +DGA +RFF ITLP++TP +FFNL+M I F FT A++++ GGP Sbjct: 193 IPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISKGEGGP 252 Query: 240 LNSTLFYNLYLYNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGDDQ 296 L+ TL Y+LYL+ +AF F MGYASA++W ++SS+WV+Y+ ++ Sbjct: 253 LDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHYESKEE 309 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 161/257 (62%), Gaps = 4/257 (1%) Query: 13 FILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFHDELFYQSLKV 72 F+LP LLG +IF P++ SL +SF+ WD+ V +I + G +N+K +F+D F++S + Sbjct: 16 FLLPNLLGFLIFIAIPILGSLGISFTDWDL---VSTIHFTGFENYKRLFNDPEFWKSFRN 72 Query: 73 TFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIPAVATSMMWVMIFNPEY 132 T F + +P + + A++LN + + FFR ++F+P + VA S++W +FNP Y Sbjct: 73 TITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSY 132 Query: 133 GILNQALSWFGIQGPAWLQDPSYALGALIVMGLWG-IGNTIIIYLSGLQGVPEDLYEAGE 191 G++N LS GI GP WL DP A+ A+I+ W IG ++++L GLQ + YEA Sbjct: 133 GLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAAN 192 Query: 192 LDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNSTLFYNLYLY 251 +DGA R+ FSIT+PL+TPT FF I+ +I FQ F Q +MT GGP +T+ +Y Sbjct: 193 MDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIY 252 Query: 252 NKAFMEFDMGYASALSW 268 N AF F+MGYASA+SW Sbjct: 253 NHAFRYFEMGYASAMSW 269 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 181/288 (62%), Gaps = 6/288 (2%) Query: 10 GYWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIF-HDELFYQ 68 G +I P+++GL+IFT P + S LSF+++D+++ Y G++N++ + D+LF++ Sbjct: 8 GLAYISPYIIGLIIFTAFPFVSSFFLSFTEYDLMS---PPVYNGIENYRYMLTEDDLFWK 64 Query: 69 SLKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVI-PAVATSMMWVMI 127 S+ VTF + +++PL ++ IA +LN + RG+ FFR F++PS++ +VA +++W + Sbjct: 65 SMGVTFAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIAVLWRAL 124 Query: 128 FNPEYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQGVPEDLY 187 F + G+LN + FG + WL +PS AL ++ ++ +W G+ ++I+L+ LQ VP+ Y Sbjct: 125 FAID-GLLNSFIGVFGFEAINWLGEPSLALTSVTLLRVWQFGSAMVIFLAALQNVPQSQY 183 Query: 188 EAGELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNSTLFYN 247 EA +DGA ++ F +T+PLITP +FFN IM FQ FT +V+T GGP + T ++ Sbjct: 184 EAAMIDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTYLFS 243 Query: 248 LYLYNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGDD 295 LY+Y+ AF FDMGY +AL+W +SS +WV+Y D Sbjct: 244 LYIYDTAFKYFDMGYGAALAWVLFLVVALFASIAFKSSKYWVFYSADK 291 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/264 (42%), Positives = 166/264 (62%), Gaps = 4/264 (1%) Query: 5 KSDRAGYWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFHDE 64 R Y FI +L L IF + P+ +L +SF+ +D+ V S ++G DN+ +F D Sbjct: 12 HQQRMAYLFIALPVLLLAIFMILPIGMALFVSFTDYDI---VNSPNWIGFDNYIKMFRDP 68 Query: 65 LFYQSLKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIPAVATSMMW 124 F SLK T I+ + VPL VAS+ A+L+NM +G FR F++P + VAT+ +W Sbjct: 69 YFLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIW 128 Query: 125 VMIFNPEYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLW-GIGNTIIIYLSGLQGVP 183 + NP+YG++N+ L WFGI GPAWL D ++A+ A+++M +W G ++I+L+GLQG+P Sbjct: 129 YWLLNPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIP 188 Query: 184 EDLYEAGELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNST 243 +LYEA +++GA ++ F +T P ++ T F M II FQ F QA+V+T GGP NST Sbjct: 189 ANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNST 248 Query: 244 LFYNLYLYNKAFMEFDMGYASALS 267 + Y+YN+ F MGYASA+S Sbjct: 249 ITLVYYIYNEGFGGLKMGYASAIS 272 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,433,877 Number of extensions: 910847 Number of successful extensions: 5194 Number of sequences better than 1.0e-05: 181 Number of HSP's gapped: 4887 Number of HSP's successfully gapped: 184 Length of query: 298 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 192 Effective length of database: 26,153,027 Effective search space: 5021381184 Effective search space used: 5021381184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)