BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0010.p (439 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 138 1e-32 all1916 [G] COG1653 ABC-type sugar transport system, periplasmic... 130 3e-30 Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic... 117 3e-26 MT2101 [G] COG1653 ABC-type sugar transport system, periplasmic ... 117 3e-26 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 114 3e-25 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 161/325 (49%), Gaps = 14/325 (4%) Query: 45 EKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTAPD 104 +K ++T+ + G ++ EF +PDI+V + I + Y TKL T +A G APD Sbjct: 29 DKTEITYYQFSAPADGKALDKMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPD 88 Query: 105 VFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLPKDFNPL 164 F + F+ Y +KGV+ L YI KDK FD + K D + GK Y + + F+ + Sbjct: 89 AFELNYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNV 148 Query: 165 ALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWEYPIYTYLW 224 YNK +FD AGV YP+ WTW D AAA+KLT +N + G + + Sbjct: 149 VTIYNKDLFDKAGVEYPTADWTWKDEEAAAKKLTDAKNKVW---GTSQPVTMNEFFKVAA 205 Query: 225 ANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGD--SSMFM 282 NG I ++D TK +N + V+AL ++ E++V+P+P D + G +FM Sbjct: 206 QNGGSIFDKDMTKTT--INSPENVEAL-THLTNEVTESKVAPSPSD---LSGQLPEDLFM 259 Query: 283 TGKLAMMVTGRWIKSDLDKSDVEYGSALIPKGADGTRAGIIAAAGWAMNSKTKHKAESYE 342 G++AM+ TG W+ D + + + + +A A G ++ + K +++ Sbjct: 260 NGQIAMLHTGIWLFDMF--QDAPFKWDVQVEAGNKQKATHFFANGIGVSKDSDKKEAAFK 317 Query: 343 LMKWLSG-ADAQKLRSKNGLVLPAT 366 ++S +A K+R N LPAT Sbjct: 318 FASFMSANKEAAKIRIANNWELPAT 342 >all1916 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/328 (30%), Positives = 172/328 (52%), Gaps = 32/328 (9%) Query: 47 VKLTFSIWGDVNTGAVEQ----QLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTA 102 V + S WG VEQ Q+ +F A HP I+VK+E I D Y + T L A Sbjct: 37 VTVKLSGWGG---SPVEQKLLKQVLQDFEAQHPHIKVKYEVI-SDQYMDVIKTRLIGEAA 92 Query: 103 PDVFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLPKDFN 162 PDVF + + + + V+EPLD+YI + FDL+ ++ NL+D + +Y PKD++ Sbjct: 93 PDVFYLDALEAPFLMSQNVLEPLDNYITPE--FDLSDFEANLLDNFKYQNHIYGFPKDYS 150 Query: 163 PLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGF-NAGTWEYPIYT 221 LAL+YNKK F AG++ P +WT ++ +Q+LT GK ++GF A +Y Sbjct: 151 TLALFYNKKAFAAAGLSSPPATWT--ELRTYSQQLT----GKLNKYGFGEAPELARQVYK 204 Query: 222 YLWANGTDIANEDGT---KAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGDS 278 + A G ++ N++G +E + G + V +++Y +++ S D T G S Sbjct: 205 -IKAFGGEVINQNGYATFASEAGLRGFQLV--IDQY-----QKDKSSAQKSDVGTNSG-S 255 Query: 279 SMFMTGKLAMMVTGRWIKSDLDKS--DVEYGSALIPKGADGTRAGIIAAAGWAMNSKTKH 336 MF K+AM++ G W L ++ +E+ +A +P + + ++ + M+ +++H Sbjct: 256 EMFGQEKVAMVIEGNWAIPYLQETFPQLEFATAQLPT-INNKKGTMVFTVAYVMSKQSQH 314 Query: 337 KAESYELMKWLSGADAQKLRSKNGLVLP 364 KAE++EL+ +L+G + + G LP Sbjct: 315 KAEAWELISYLTGKAGMQKWTSTGFALP 342 >Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 439 Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 165/334 (49%), Gaps = 14/334 (4%) Query: 49 LTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTAPDVFLV 108 LTF + + ++ +EF +PDI+V+ + G G +L T A G PDV + Sbjct: 38 LTFFFAANPDELRPRMRVVNEFQRRYPDIKVR-ALLSGPGVMQQLATFCAGGKCPDVLMA 96 Query: 109 GEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKN---LIDMEQIGGKLYYLPKDFNPLA 165 E + D+GV+ L+ +A+D+AF + + L + G Y P+ ++ Sbjct: 97 WELTYAELADRGVLLDLNTLLARDQAFAAELKSDSIGALYETFTFNGGQYAFPEQWSGNF 156 Query: 166 LWYNKKIFDDAGVAYPSES----WTWDDMFAAAQKLTKQ-ENGKYTQFGF-NAGTWEYPI 219 L+YNK++FDDAGV P S W++ + AAQ LTKQ +G+ Q+GF NA Y Sbjct: 157 LFYNKQLFDDAGVPPPPGSWERPWSFAEFLDAAQALTKQGRSGRDRQWGFVNAWVSFYAA 216 Query: 220 YTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGDSS 279 + NG + + + ++A++ Y L T +++V+P+ + Q+M + Sbjct: 217 GLFAMNNGVPWSVPRMNPTHLNFDHDGFLEAVQFYADL-TNKHKVAPSAAEQQSM-STAD 274 Query: 280 MFMTGKLAMMVTGRWIKSDLDKSD-VEYGSALIPKGADGTRAGI-IAAAGWAMNSKTKHK 337 +F GK + + G W D++D +++ A +P G G A I G A+ + ++ K Sbjct: 275 LFSVGKAGIALAGHWRYQTFDRADGLDFDVAPLPIGPRGRAACSDIGVTGLAIAATSRRK 334 Query: 338 AESYELMKWLSGADAQKLRSKNGLVLPATVAELD 371 +++E +K+ +G Q L ++ L +P + ++ Sbjct: 335 DQAWEFVKFATGPVGQALIGESRLFVPVLRSAIN 368 >MT2101 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 439 Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 165/334 (49%), Gaps = 14/334 (4%) Query: 49 LTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTAPDVFLV 108 LTF + + ++ +EF +PDI+V+ + G G +L T A G PDV + Sbjct: 38 LTFFFAANPDELRPRMRVVNEFQRRYPDIKVR-ALLSGPGVMQQLATFCAGGKCPDVLMA 96 Query: 109 GEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKN---LIDMEQIGGKLYYLPKDFNPLA 165 E + D+GV+ L+ +A+D+AF + + L + G Y P+ ++ Sbjct: 97 WELTYAELADRGVLLDLNTLLARDQAFAAELKSDSIGALYETFTFNGGQYAFPEQWSGNF 156 Query: 166 LWYNKKIFDDAGVAYPSES----WTWDDMFAAAQKLTKQ-ENGKYTQFGF-NAGTWEYPI 219 L+YNK++FDDAGV P S W++ + AAQ LTKQ +G+ Q+GF NA Y Sbjct: 157 LFYNKQLFDDAGVPPPPGSWERPWSFAEFLDAAQALTKQGRSGRDRQWGFVNAWVSFYAA 216 Query: 220 YTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGDSS 279 + NG + + + ++A++ Y L T +++V+P+ + Q+M + Sbjct: 217 GLFAMNNGVPWSVPRMNPTHLNFDHDGFLEAVQFYADL-TNKHKVAPSAAEQQSM-STAD 274 Query: 280 MFMTGKLAMMVTGRWIKSDLDKSD-VEYGSALIPKGADGTRAGI-IAAAGWAMNSKTKHK 337 +F GK + + G W D++D +++ A +P G G A I G A+ + ++ K Sbjct: 275 LFSVGKAGIALAGHWRYQTFDRADGLDFDVAPLPIGPRGRAACSDIGVTGLAIAATSRRK 334 Query: 338 AESYELMKWLSGADAQKLRSKNGLVLPATVAELD 371 +++E +K+ +G Q L ++ L +P + ++ Sbjct: 335 DQAWEFVKFATGPVGQALIGESRLFVPVLRSAIN 368 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 154/316 (48%), Gaps = 17/316 (5%) Query: 59 TGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTAPDVFLVGEGDFISYVD 118 TG +++ F A +P I + FE +P D KLTT +++GT D+ ++G I +V Sbjct: 26 TGPYFEEVKKAFEAENPGITLNFEVVPWDVLLQKLTTDISAGTNADLSIIGTRWLIDFVQ 85 Query: 119 KGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLPKDFNPLALWYNKKIFDDAGV 178 +G+ EPLD Y+ + + + + + GK Y LP + A++YNK +F+ AG+ Sbjct: 86 QGIAEPLDGYMNDEFK---GRFIETFLSPSVLDGKTYGLPIAASVRAMYYNKDLFEKAGI 142 Query: 179 AYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWEYPIYTY--LWANGTDIANEDGT 236 P + WD++ A A K+ K G+ FG E +Y Y +W+ GT+I N+DGT Sbjct: 143 KNPPAN--WDELKADAAKI-KALGGENYGFGLQGKEIETDVYYYYAMWSYGTEILNKDGT 199 Query: 237 KAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGD-SSMFMTGKLAMMVTGRWI 295 +G T ALE + + P T D ++F GK+ MM+T ++ Sbjct: 200 ------SGLSTPGALEAAKLYKSMIDDGLTQPGVTSYAREDVQNLFKQGKVGMMITAPFL 253 Query: 296 KSDL--DKSDVEYGSALIPKGADGTRAGIIAAAGWAMNSKTKHKAESYELMKWLSGADAQ 353 + + + +++YG A IP G G R M +K+K E+++++ +L D + Sbjct: 254 SNQIKEEAPNLKYGVAAIPAGPTGARGTYGVTDSVIMFQNSKNKEEAWKVLDFLFQKDWR 313 Query: 354 KLRSKNGLVLPATVAE 369 ++N LP E Sbjct: 314 AKFTQNEGFLPVNKEE 329 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,572,058 Number of extensions: 1377609 Number of successful extensions: 1956 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 1907 Number of HSP's successfully gapped: 66 Length of query: 439 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 330 Effective length of database: 25,807,025 Effective search space: 8516318250 Effective search space used: 8516318250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)