BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0011.p (295 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 173 2e-43 Rv2040c [G] COG1175 ABC-type sugar transport systems, permease c... 162 5e-40 MT2100 [G] COG1175 ABC-type sugar transport systems, permease co... 162 5e-40 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 161 1e-39 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 153 3e-37 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 164/292 (56%), Gaps = 7/292 (2%) Query: 7 SNKKIIALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINP-MTFIGLDNYTKMFTVDKS 65 NK I LFL+P L VFL+F ++PI + SL W +P TFIGL NY ++F D Sbjct: 4 QNKIIPYLFLVPAL-VFLLFVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFH-DPV 61 Query: 66 FWQAVWNSLAFLLVGVFIQLPVSFALALLVSRKMKGRKW---FRNIYFFPVVMSTTMVSL 122 F+QA+ N++ + ++ + Q+ LA ++ K+ RKW FR ++F PVV+S T+++L Sbjct: 62 FYQALTNNVLYAVISIVCQVFGGLILAAVLEDKLV-RKWSPFFRTVFFLPVVISMTVIAL 120 Query: 123 LWVKIYDPNIGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAGM 182 L+ IY+P G+LN L+ D TA+LSV+ V+ W VGY ++ + Sbjct: 121 LFDFIYNPETGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVSI 180 Query: 183 QGIPEQYYEAAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTNGGP 242 Q IP++ YEAA+LDGA + HIT P ++ + +V+ + A F Y++T GGP Sbjct: 181 QKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGP 240 Query: 243 LNSTTVIALKMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKILTQEKIE 294 ++ V++ +++ AF K GY SA+A +++ L +S + K K E Sbjct: 241 GKASEVLSTFLYKSAFTKDMMGYASAIATVVLIITLALSLMQMKFFKTGKEE 292 >Rv2040c [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 158/281 (56%), Gaps = 5/281 (1%) Query: 14 LFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFTVDKSFWQAVWNS 73 +F+ P L ++F P+ + Y S Q WD TF+ LDN+ +FT D F AV N+ Sbjct: 14 MFVAPNLAAVVVFMLFPLGFSLYMSFQKWDLFTHATFVRLDNFRNLFTSDPLFLIAVVNT 73 Query: 74 LAFLLVGVFIQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTMVSLLWVKIYDPNIG 133 + + V + VS +A ++RK+KG FR + F P+ +S+ +++++W +++ + G Sbjct: 74 AVYTVGTVVPTVIVSLVVAAFLNRKIKGISLFRTVVFLPLAISSVVMAVVWQFVFNTDNG 133 Query: 134 MLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAGMQGIPEQYYEAA 193 +LN ++ + + A++S+ +V+ W V + ++L A MQG+PE YEAA Sbjct: 134 LLNIMLG--WLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVYEAA 191 Query: 194 KLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMT--NGGPLNSTTVIAL 251 ++DGA + IT PL+ L +V+++I+A + F+ VYV+T NGGP +T V+ + Sbjct: 192 RIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYVLGI 251 Query: 252 KMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKILTQEK 292 +FQ AF FGY SALA M LV++ VL +T + Sbjct: 252 MLFQHAFSFLEFGYASALAWVMFAILLVLT-VLQLRITHRR 291 >MT2100 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 158/281 (56%), Gaps = 5/281 (1%) Query: 14 LFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFTVDKSFWQAVWNS 73 +F+ P L ++F P+ + Y S Q WD TF+ LDN+ +FT D F AV N+ Sbjct: 14 MFVAPNLAAVVVFMLFPLGFSLYMSFQKWDLFTHATFVRLDNFRNLFTSDPLFLIAVVNT 73 Query: 74 LAFLLVGVFIQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTMVSLLWVKIYDPNIG 133 + + V + VS +A ++RK+KG FR + F P+ +S+ +++++W +++ + G Sbjct: 74 AVYTVGTVVPTVIVSLVVAAFLNRKIKGISLFRTVVFLPLAISSVVMAVVWQFVFNTDNG 133 Query: 134 MLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAGMQGIPEQYYEAA 193 +LN ++ + + A++S+ +V+ W V + ++L A MQG+PE YEAA Sbjct: 134 LLNIMLG--WLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVYEAA 191 Query: 194 KLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMT--NGGPLNSTTVIAL 251 ++DGA + IT PL+ L +V+++I+A + F+ VYV+T NGGP +T V+ + Sbjct: 192 RIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYVLGI 251 Query: 252 KMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKILTQEK 292 +FQ AF FGY SALA M LV++ VL +T + Sbjct: 252 MLFQHAFSFLEFGYASALAWVMFAILLVLT-VLQLRITHRR 291 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 150/259 (57%), Gaps = 3/259 (1%) Query: 12 IALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFTVDKSFWQAVW 71 + +FLLP L FLIF +PI+ + S DWD ++ + F G +NY ++F D FW++ Sbjct: 13 LCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFN-DPEFWKSFR 71 Query: 72 NSLAFLLVGVFIQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTMVSLLWVKIYDPN 131 N++ F++ + + + A AL++++K+K R +FR +YF PV+ S VSL+W +++P+ Sbjct: 72 NTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPS 131 Query: 132 IGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAGMQGIPEQYYE 191 G++N + D +TA+++V+I + W +G+ M++ G+Q I YYE Sbjct: 132 YGLINYFLSLIGIAGPNWLT--DPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYE 189 Query: 192 AAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTNGGPLNSTTVIAL 251 AA +DGA+ + + IT PLL+ ++++I + + F+ V +MT GGP +T + Sbjct: 190 AANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQ 249 Query: 252 KMFQEAFLKQNFGYGSALA 270 ++ AF GY SA++ Sbjct: 250 NIYNHAFRYFEMGYASAMS 268 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 155/287 (54%), Gaps = 4/287 (1%) Query: 6 LSNKKIIALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFTVDKS 65 + +++ LF+ + + IF +PI M + S D+D +N +IG DNY KMF D Sbjct: 11 IHQQRMAYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFR-DPY 69 Query: 66 FWQAVWNSLAFLLVGVFIQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTMVSLLWV 125 F ++ N++ + + V + L S A+L++ KG FR ++ PV+ ST + +W Sbjct: 70 FLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWY 129 Query: 126 KIYDPNIGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAGMQGI 185 + +P G++N ++ D+ A+ ++++++ W G NM+I AG+QGI Sbjct: 130 WLLNPQYGLINRVLGWFGINGPAWLY--DSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGI 187 Query: 186 PEQYYEAAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTNGGPLNS 245 P YEA+K++GA+ WK R++T+P LS + + +I A + F+ YV+T GGP NS Sbjct: 188 PANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNS 247 Query: 246 TTVIALKMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKILTQEK 292 T + ++ E F GY SA++ + L LV S ++N + +E Sbjct: 248 TITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFS-IINMRVNKED 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,257,354 Number of extensions: 670577 Number of successful extensions: 2606 Number of sequences better than 1.0e-05: 167 Number of HSP's gapped: 2334 Number of HSP's successfully gapped: 168 Length of query: 295 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 189 Effective length of database: 26,153,027 Effective search space: 4942922103 Effective search space used: 4942922103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)