BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0010.p (431 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic ... 65 2e-10 BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 62 1e-09 BMEII0590 [G] COG1653 ABC-type sugar transport system, periplasm... 54 6e-07 SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic... 54 7e-07 lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 51 4e-06 >PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 441 Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 84 KTKLSVALAANELPDVFQQHAGKSYRTPVLQSKTVAPLNDTL-ESTGLGAQFLDNQLVTE 142 K L + A + PD FQ HAG +++ + P++D E + Q+V Sbjct: 89 KMVLQSLMLAGKPPDTFQVHAGYEMAR-YIKANQLTPIDDIWTEDMKKNYPKVIQQMVIF 147 Query: 143 EDGNIYSVPSNISTTLVLYYNKKLISELG--AAAPATWDDLQALIKTANDKGMIPIALGG 200 + + Y+VP N+ V++YNK++ + G ++ T DDL A+ + + G+ P ALG Sbjct: 148 -NNHYYAVPINVHRANVIWYNKQIFKKYGIDPSSIKTIDDLFAVAEKLKENGVTPFALGD 206 Query: 201 KERWQGDLLYD-MLVAREDVDAFDKAINGQAKFTD 234 + +W +++ MLVA VD ++K ING+ D Sbjct: 207 RNKWPATQVFEVMLVAVGGVDYYEKFINGEISAND 241 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/359 (22%), Positives = 151/359 (42%), Gaps = 27/359 (7%) Query: 71 VELKYEYIQDETYKTKLSVALAANELPDVFQQHAGKSYRTPVLQSKTVAPLNDTLESTGL 130 ++++ E + +++YK K+ V L PD++ + + + +K + + T Sbjct: 63 IDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYKNDTDW 122 Query: 131 GAQFLDNQLV--TEEDGNIYSVPSNISTTLVLYYNKKLISELGAAAPATWDDLQALIKTA 188 +Q + +Q+ T E+ Y VP + +YNK + +L P TWD+L + K Sbjct: 123 SSQLVQSQITPFTYENKQ-YGVPWQMDAK-SFFYNKDIFQKLNLDPPKTWDELIDVSKKL 180 Query: 189 NDKGMIPIALGGKERWQGDLLYDMLVARE-DVDAFDKAINGQA-KFTDTPFVEAANKVVT 246 + G PI+ G K W L R D +K N + +FTD +V+A K+ Sbjct: 181 KEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQE 240 Query: 247 LVNSNAFQKGFLGSAYLDAQELFKNDKAVMWIDGSFNFSSLSTAMGDNLGYIAFPK-TGA 305 L+ F K + ++ FK+ K+ M + + NLG FP+ +G Sbjct: 241 LM--PYFNKHVNSVDHEYVRQQFKSGKSAMIYAETAEIKLVEPV---NLGMFPFPEISGQ 295 Query: 306 EDVLSATIGFQNAQAPYSLFVNNSSANLDKAKEFAIRLSLKLNDEFVRKGLPGYAKSEVK 365 + A G AP +++ + + +A EF L+ K E + K + Y+ + Sbjct: 296 KGSSEALTG-----APEGFMISSRTKHPKEAMEFLQFLTSKRMGEKLVKDVGKYSAVQGT 350 Query: 366 SESQN-----KELSAYAADINKTSKTQAMWFGL-LSADVGQEYRDLTQALYGGQLTADE 418 + +N +E + D +K+ WF + + +V Y Q + GG +T + Sbjct: 351 ATEENATAIQREAVQHIVD----AKSMVPWFDMDVDVEVADAYLTGVQQMLGGDMTPQQ 405 >BMEII0590 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 401 Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 144 DGNIYSVPSNISTTLVLYYNKKLISELGAAAPATWDDLQALIKTANDKGMIPIALGGKER 203 DG+ + P NI +T ++ NK + + G P WD+L AL+ +G+ PIA GG + Sbjct: 115 DGHWIAAPVNIHSTNWMWINKAALDKAGGKEPTNWDELIALLDNFKAQGITPIAHGG-QP 173 Query: 204 WQGDLLYDMLVAREDVDAFDKA 225 WQ ++D +V D + KA Sbjct: 174 WQDATIFDAVVLSFGPDFYKKA 195 >SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 459 Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 12/199 (6%) Query: 144 DGNIYSVPSNISTTLVLYYNKKLISELGAAAPATWDDLQALIKTANDKGMIPIALGGKER 203 +G Y +P+ T ++Y K + E G P +WDDL A + + P+A+G K+ Sbjct: 176 EGKQYGLPTG-GTLWGMFYRKDVFDEHGLKVPTSWDDLLAFGEKCKSASLTPVAMGTKDL 234 Query: 204 WQGDLLYDMLVAREDVDAFDKA---INGQAKFTDTPFVEAANKVVTLVNSNAFQKGFLGS 260 W +D + R ++ DK +NG+ +TD L+ F Sbjct: 235 WPAAGWFDQMNLR--INGLDKHFALMNGEMAYTDETLKPVFEHWEELIKQGFFTPDHTSF 292 Query: 261 AYLDAQELFKNDKAVMWIDGSFNFSSLSTAMGDNLGYIAFPKTGAEDVLSATIGFQNAQA 320 + +A +A M G+F ++ L + FP V+ +G + Sbjct: 293 GWQEAGAFLAQKRAGMMNLGAFVRAAFPRQDLPQLTFAPFP------VIEDGLGRYEEFS 346 Query: 321 PYSLFVNNSSANLDKAKEF 339 S+ + ++ N A+EF Sbjct: 347 LNSVHIPTNAKNKPGAREF 365 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 31/281 (11%) Query: 22 SCGGAEANNGGTQGQEAAAADSKKSVTLWIF-DADPMYQSXXXXXXXXVGVELKYEYIQD 80 +CGG++ +A ++DSK + +W D + G+E+K + I Sbjct: 21 ACGGSK--------DDANSSDSK-VLNVWAMGDEAKSLKELAQKFTKDTGIEVKVQVIPW 71 Query: 81 ETYKTKLSVALAANELPDVFQQHAGKSYRTPVLQSKTVAPLNDTLE-STGLGAQ--FLDN 137 KL A+A+ PDV Q G ++ +++ + + +E S + + F + Sbjct: 72 ANAHDKLLTAVASKSGPDVVQM--GTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGS 129 Query: 138 QLVTEEDGNIYSVPSNISTTLVLYYNKKLISELG-AAAPATWDDLQ--ALIKTANDKGMI 194 T+ DG Y VP + T VL+Y L+ ++G AP TWD+L AL + K M Sbjct: 130 VKTTQFDGKTYGVPW-YAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKLSKRGKDMY 188 Query: 195 PIALGGKERWQGDLLYDMLVAREDVDA-FDKAINGQAKFTDTPFVEAANKVVTLVNSNAF 253 A+ E+ G + R++ FDK +G F PFV+ + + + + + Sbjct: 189 GFAIDPNEQTTG-----FIFGRQNGSPLFDK--DGTPVFNKKPFVDTVTYLDSFIKNGSA 241 Query: 254 QKGFLGSAYLDAQELFKNDKAV-MWIDGSFNFSSLSTAMGD 293 LG LDA + F D V M++ G + ++L D Sbjct: 242 PDTDLG---LDASQSFGGDGIVPMFMSGPWMVNTLKDTAPD 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.129 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,617,394 Number of extensions: 1080153 Number of successful extensions: 1717 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 1721 Number of HSP's successfully gapped: 14 Length of query: 431 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 322 Effective length of database: 25,807,025 Effective search space: 8309862050 Effective search space used: 8309862050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)