BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0009.p (284 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3679 [T] COG4753 Response regulator containing CheY-like recei... 147 2e-35 SP0661 [T] COG4753 Response regulator containing CheY-like recei... 146 4e-35 SPy1556 [T] COG4753 Response regulator containing CheY-like rece... 132 8e-31 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 110 3e-24 SPy1062 [T] COG4753 Response regulator containing CheY-like rece... 101 1e-21 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/270 (36%), Positives = 144/270 (53%), Gaps = 19/270 (7%) Query: 10 VLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMNG 69 VLIVDDE R+ L ++ S V A EA+ + E+ IDLIITDI MP M+G Sbjct: 6 VLIVDDEPRSRRGLKRTLEAWSPKLLNVQTAASAKEAITRLNEETIDLIITDIRMPEMSG 65 Query: 70 LDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRAQL 129 L VKA++ + I I++Y F YA A+ LG HYLLKPV +E + +A + + L Sbjct: 66 LHLVKALQEQNPKPVCIVISAYSEFEYAHTALELGVRHYLLKPVKKEKLIEA---VESAL 122 Query: 130 QEKWEEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTAHYAEDTLSL 189 Q K E++R+ G + ++ S IH+A Y+ AH + + L Sbjct: 123 QMKKEQDRF--------GQVEKVWDEKIDAIEKERLSSSDSIHEALHYIDAHL-DQKIGL 173 Query: 190 QSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATEDASVPKVATIA 249 + A ++ +NPSYLS +FK++TN +F EY+T RL A LL +T+ ++ IA Sbjct: 174 KDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLL---VSTDRP----ISDIA 226 Query: 250 HQVGYRDPFYFSKCFKKKYGITPNKVYGGT 279 + GY+ YF K FK+ G+TP + GT Sbjct: 227 EKCGYQTAKYFIKIFKEHEGMTPTQYRKGT 256 >SP0661 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 245 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 31/269 (11%) Query: 10 VLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMNG 69 +LIV+DEY RQ L L++ + E++ +AE+G +A ++++Q D+I+TDI MP++NG Sbjct: 5 ILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLNG 64 Query: 70 LDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRAQL 129 + VR L+F+T YD+F YA A+ LG D YLLKP + +E+ L I+ +L Sbjct: 65 IQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQKL 124 Query: 130 QEKWEEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTAHYAEDTLSL 189 ++ +EE+ + L R A + +H A+ SL Sbjct: 125 DKEEKEEQLQDLL------------------------TNRFEGNMAQKIQSHLADSQFSL 160 Query: 190 QSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATEDASVPKVATIA 249 +S AS L +P+YLS + KKE F +Y+ R ++Q + K+ IA Sbjct: 161 KSLASDLGFSPTYLSSLIKKELGLPFQDYLVRER-------VKQAKLLLLTTDLKIYEIA 213 Query: 250 HQVGYRDPFYFSKCFKKKYGITPNKVYGG 278 +VG+ D YF++ FK+ G+TP + G Sbjct: 214 EKVGFEDMNYFTQRFKQIAGVTPRQFKKG 242 >SPy1556 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 246 Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 90/269 (33%), Positives = 138/269 (51%), Gaps = 29/269 (10%) Query: 10 VLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMNG 69 +LIV+DEY RQ + L+D++ + V EAE+G A + +++ D+++TDI MP +NG Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 70 LDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRAQL 129 + + ++ L+F+T YD+F YA A+ LGAD YLLKP + VE L +R +L Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKKL 123 Query: 130 QEKWEEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTAHYAEDTLSL 189 + + E I L +E QP + + A + A+ L+L Sbjct: 124 ELSKKTET-IQEL-VE-----QPQKE---------------VSAIAMAIHERLADSDLTL 161 Query: 190 QSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATEDASVPKVATIA 249 +S A L +P+YLS + KKE F +Y+ RL KA S K+ IA Sbjct: 162 KSLAQQLGFSPNYLSVLIKKELGMPFQDYLVQERLKKA-------KLLLLTSNLKIYEIA 214 Query: 250 HQVGYRDPFYFSKCFKKKYGITPNKVYGG 278 QVG+ D YFS+ FK+ G+TP++ G Sbjct: 215 EQVGFEDMNYFSQRFKQLVGVTPSQYKKG 243 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 54/126 (42%), Positives = 85/126 (67%), Gaps = 2/126 (1%) Query: 9 RVLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMN 68 +VL+ DDE++ R L LI+W G+EV AEA++G +A ++++E + DL+ITDI MP + Sbjct: 3 KVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFD 62 Query: 69 GLDFVKAVR-ALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRA 127 GL ++ V L K I I+ Y++F+YAQ+A+ GA ++LKP+D++ +E AL + A Sbjct: 63 GLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLAA 122 Query: 128 QL-QEK 132 L QEK Sbjct: 123 TLDQEK 128 Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 8/110 (7%) Query: 163 RPGSGKRLIHKAAAYVTAHYAEDTLSLQSTASALFVNPSYLSHVFKKETNESFVEYVTNI 222 R + K I+K Y+ HY E+ +SL+S AS ++NP Y+ +FKK F EY+ + Sbjct: 415 RKENMKSDIYKVKTYIENHYHEN-ISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKL 473 Query: 223 RLGKAMELLRQGAATEDASVPKVATIAHQVGYRDPFYFSKCFKKKYGITP 272 R+ +A +LLRQ +V +A +VG+ YF F+K +TP Sbjct: 474 RMNEAKKLLRQTDM-------RVYEVAERVGFGSTDYFVTQFEKINKMTP 516 >SPy1062 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 262 Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 24/264 (9%) Query: 9 RVLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMN 68 +++I++DE+ R+ L + ID+ + V+ EA+DG E +++E + D+++TDI MP M Sbjct: 3 KLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMT 62 Query: 69 GLDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRAQ 128 D + + D I ++ Y +F A+ AI G +L KP+++ A+ + L TI A+ Sbjct: 63 AFDMFEVTK--DQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAK 120 Query: 129 LQEKWEEERYINRLRIEAGYGGQP-ASDQTSEDGGRPGSGKRLIHKAAAYVTAHYAEDTL 187 + E+++ N+ Y P +DQ E ++ +V AH+ +D + Sbjct: 121 I----EKQKGSNQKTDACVYIPLPQMTDQIPE----------VVKDILEWVHAHF-QDKI 165 Query: 188 SLQSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATEDASVPKVAT 247 S A L + SY+ KK +Y+ R+ +A++L++Q V Sbjct: 166 STSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDL------MVYE 219 Query: 248 IAHQVGYRDPFYFSKCFKKKYGIT 271 IA VG D YF + FKK G T Sbjct: 220 IAQAVGIYDYRYFDRVFKKYLGQT 243 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,748,952 Number of extensions: 840199 Number of successful extensions: 3797 Number of sequences better than 1.0e-05: 452 Number of HSP's gapped: 3836 Number of HSP's successfully gapped: 460 Length of query: 284 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 179 Effective length of database: 26,268,361 Effective search space: 4702036619 Effective search space used: 4702036619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)