BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0004.p
         (113 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR0417 [T] COG2337 Growth inhibitor                                   135   2e-32
BH3721 [T] COG2337 Growth inhibitor                                   125   2e-29
ZchpA [T] COG2337 Growth inhibitor                                    103   6e-23
chpA [T] COG2337 Growth inhibitor                                     103   6e-23
ZchpA [T] COG2337 Growth inhibitor                                    103   6e-23

>DR0417 [T] COG2337 Growth inhibitor
          Length = 117

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 77/107 (71%)

Query: 6   YVPDRGDLIWLQFNPQAGHEQAGKRPALVVSPASYNRKVGLSLLCPVTSKQKDYPFEVVI 65
           YVPD G L+WL F PQAGHEQ G+RPALV+SPA+YN   GL   CPVTS+ K YPFEV +
Sbjct: 5   YVPDAGHLVWLNFTPQAGHEQGGRRPALVLSPAAYNGVTGLMQACPVTSRAKGYPFEVTL 64

Query: 66  PQDLPIEGVILADQVKSLDWQSRQAAFICKVPQIILSDVVAKLDLLI 112
           P  L + GV+LAD  +SLDW+SR+A  + + P  +L++V  KL  L+
Sbjct: 65  PAHLGVSGVVLADHCRSLDWRSRRAEQLAEAPADVLAEVRGKLGSLL 111


>BH3721 [T] COG2337 Growth inhibitor
          Length = 109

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 76/99 (76%)

Query: 7   VPDRGDLIWLQFNPQAGHEQAGKRPALVVSPASYNRKVGLSLLCPVTSKQKDYPFEVVIP 66
           VPDRG+L+++ FNPQ+GH+QAG RPA+V+SP  +N+  G +++CP+T +QK YPFE+ IP
Sbjct: 3   VPDRGNLVYVDFNPQSGHDQAGTRPAIVLSPKLFNKNTGFAVVCPITRQQKGYPFEIEIP 62

Query: 67  QDLPIEGVILADQVKSLDWQSRQAAFICKVPQIILSDVV 105
             LPIEGVIL DQVKSLDW++R      + P+  ++D +
Sbjct: 63  PGLPIEGVILTDQVKSLDWRARNFHIKGQAPEETVTDCL 101


>ZchpA [T] COG2337 Growth inhibitor
          Length = 111

 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 6   YVPDRGDLIWLQFNPQAGHEQAGKRPALVVSPASYNRKVGLSLLCPVTSKQKDYPFEVVI 65
           YVPD GDLIW+ F+P  G EQAG RPA+V+SP  YN K G+ L  P T++ K YPFEVV+
Sbjct: 5   YVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVL 64

Query: 66  PQDLPIEGVILADQVKSLDWQSRQAAFICKVPQIILSDVVAKLDLLI 112
                 +GV LADQVKS+ W++R A     V    L  + AK+++LI
Sbjct: 65  SGQ-ERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLI 110


>chpA [T] COG2337 Growth inhibitor
          Length = 111

 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 6   YVPDRGDLIWLQFNPQAGHEQAGKRPALVVSPASYNRKVGLSLLCPVTSKQKDYPFEVVI 65
           YVPD GDLIW+ F+P  G EQAG RPA+V+SP  YN K G+ L  P T++ K YPFEVV+
Sbjct: 5   YVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVL 64

Query: 66  PQDLPIEGVILADQVKSLDWQSRQAAFICKVPQIILSDVVAKLDLLI 112
                 +GV LADQVKS+ W++R A     V    L  + AK+++LI
Sbjct: 65  SGQ-ERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLI 110



 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 6   YVPDRGDLIWLQFNPQAGHEQAGKRPALVVSPASYNRKVGLSLLCPVTSKQKDYPFEVVI 65
           YVPD GDLIW+ F+P  G EQAG RPA+V+SP  YN K G+ L  P T++ K YPFEVV+
Sbjct: 5   YVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVL 64

Query: 66  PQDLPIEGVILADQVKSLDWQSRQAAFICKVPQIILSDVVAKLDLLI 112
                 +GV LADQVKS+ W++R A     V    L  + AK+++LI
Sbjct: 65  SGQ-ERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLI 110


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,986,186
Number of extensions: 348082
Number of successful extensions: 469
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 13
Length of query: 113
Length of database: 38,378,431
Length adjustment: 80
Effective length of query: 33
Effective length of database: 29,151,711
Effective search space: 962006463
Effective search space used: 962006463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)