BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0003.p
         (76 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ZchpR [T] COG2336 Growth regulator                                     64   5e-11
chpR [T] COG2336 Growth regulator                                      64   5e-11
ZchpR [T] COG2336 Growth regulator                                     64   5e-11
ECs3643 [T] COG2336 Growth regulator                                   64   5e-11

>ZchpR [T] COG2336 Growth regulator
          Length = 82

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 4  VQKWGNSLGIRIPKSLALKVGIEEGSEVDLDVEDGHLIIKPKSA----TLDEILSQVTPD 59
          V++WGNS  +RIP +L   + +    EV +D+ DG LII+P       TL E+++ +TP+
Sbjct: 6  VKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPE 65

Query: 60 NLHHEVSTGEQQGREVW 76
          NLH  +  GE + +EVW
Sbjct: 66 NLHENIDWGEPKDKEVW 82


>chpR [T] COG2336 Growth regulator
          Length = 82

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 4  VQKWGNSLGIRIPKSLALKVGIEEGSEVDLDVEDGHLIIKPKSA----TLDEILSQVTPD 59
          V++WGNS  +RIP +L   + +    EV +D+ DG LII+P       TL E+++ +TP+
Sbjct: 6  VKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPE 65

Query: 60 NLHHEVSTGEQQGREVW 76
          NLH  +  GE + +EVW
Sbjct: 66 NLHENIDWGEPKDKEVW 82



 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 4  VQKWGNSLGIRIPKSLALKVGIEEGSEVDLDVEDGHLIIKPKSA----TLDEILSQVTPD 59
          V++WGNS  +RIP +L   + +    EV +D+ DG LII+P       TL E+++ +TP+
Sbjct: 6  VKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPE 65

Query: 60 NLHHEVSTGEQQGREVW 76
          NLH  +  GE + +EVW
Sbjct: 66 NLHENIDWGEPKDKEVW 82


>ECs3643 [T] COG2336 Growth regulator
          Length = 82

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 4  VQKWGNSLGIRIPKSLALKVGIEEGSEVDLDVEDGHLIIKPKSA----TLDEILSQVTPD 59
          V++WGNS  +RIP +L   + +    EV +D+ DG LII+P       TL E+++ +TP+
Sbjct: 6  VKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPE 65

Query: 60 NLHHEVSTGEQQGREVW 76
          NLH  +  GE + +EVW
Sbjct: 66 NLHENIDWGEPKDKEVW 82


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,726,870
Number of extensions: 208459
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 4
Length of query: 76
Length of database: 38,378,431
Length adjustment: 47
Effective length of query: 29
Effective length of database: 32,957,733
Effective search space: 955774257
Effective search space used: 955774257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)