BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0181.0005.p (290 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 338 6e-93 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 210 2e-54 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 209 4e-54 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 201 8e-52 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 176 4e-44 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 338 bits (867), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 165/290 (56%), Positives = 217/290 (74%), Gaps = 2/290 (0%) Query: 3 HKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEAYA 62 +KT Y+VF+ FN FL L +VLC+LPL H+ VSLS + A A LV F P+ FTL+AY Sbjct: 4 YKTKGYKVFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYE 63 Query: 63 KTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITMLF 122 +T N NF+ S +SV R VLGT +++ AAYALSKE F+ R Y+W+FVITMLF Sbjct: 64 RTIANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLF 123 Query: 123 SGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRT-VPKDLEEAAFIDGAGQ 181 +GGL+P Y+++ LGL +++ AL+LP + FN+ILLLNFFRT VPK LEE+AFIDGA Sbjct: 124 NGGLVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANH 183 Query: 182 FRTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQADMT 241 F+ F IYLP+S+P +ATVSLF MV HWN++FDG+IY DA PL TF+QTI+VQ D + Sbjct: 184 FQIFLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFS 243 Query: 242 KL-DPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVKE 290 ++ D + NLSQRT++A+QIFI+ALP+L+VYPF+Q+YFV GIV+GA KE Sbjct: 244 QITDAETLRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEKE 293 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 180/289 (62%), Gaps = 4/289 (1%) Query: 3 HKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEAYA 62 H T + RVF V N +FL + + +LP +++ S ++ A +P FTL+AY Sbjct: 8 HNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYK 67 Query: 63 KTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITMLF 122 F FL S+ VS+ TV+GTA+ L AY L+K HV + RN+ L + +MLF Sbjct: 68 YVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKR-HV-KGRNLLLNLVIFSMLF 125 Query: 123 SGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRTVPKDLEEAAFIDGAGQF 182 SGG+IP Y+++ LGL+D+ ALILP + FN+I++ NFF+ +P++LEE+A IDG + Sbjct: 126 SGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEI 185 Query: 183 RTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQADMTK 242 F+ I LP+S PV+AT +LF VG WN +F ++YI D++K PL ++ + + +D+T Sbjct: 186 GVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTA 245 Query: 243 LDPAAVANL--SQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVK 289 + + N ++ I+ + I I+ LPIL VYPFLQ++F G+++G+VK Sbjct: 246 TNGDTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 180/293 (61%), Gaps = 8/293 (2%) Query: 2 YHKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEAY 61 + +++ RVF++FN +FL L S++C LP H++ S +S +P F+L+AY Sbjct: 3 HDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAY 62 Query: 62 AKTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITML 121 F SL +S+ TV+GT ++ + ++ AY LS++ R + ++ V TML Sbjct: 63 RYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKD--LDGRRVLMFLVVFTML 120 Query: 122 FSGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRTVPKDLEEAAFIDGAGQ 181 FSGG+IP ++++ LGL+D+ ALI+P + FN+I+L NFF+ +P+ LEE+A IDG Sbjct: 121 FSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCND 180 Query: 182 FRTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIV----- 236 F+ I P+SMP +AT+SLF V +WN + I+Y+ D+S P+ ++ I++ Sbjct: 181 VGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGM 240 Query: 237 QADMTKLDPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVK 289 Q D+T+L V ++TI+ + I ++ +P+L+VYPF+Q++F G ++G+VK Sbjct: 241 QGDLTELGAGFVMP-PEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 201 bits (512), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 106/286 (37%), Positives = 177/286 (61%), Gaps = 9/286 (3%) Query: 9 RVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEAYAKTFDNA 68 R+F + FL + +++C+LP H++ S ++ + P F+L+AY F Sbjct: 4 RLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTD 63 Query: 69 NFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITMLFSGGLIP 128 SL VSV TV+GTA+++ ++++ AY LS+ + R ++L F TMLFSGG+IP Sbjct: 64 IIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVF--TMLFSGGMIP 121 Query: 129 GYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRTVPKDLEEAAFIDGAGQFRTFYSI 188 ++++ LGL+DS ALILP + FN+I+L NFF+ +P LEE+A IDG F+ I Sbjct: 122 TFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKI 181 Query: 189 YLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIV-----QADMTKL 243 LP+S+P +AT+SLF V +WN Y I+Y+ D++K P+ ++ I++ Q DM+++ Sbjct: 182 VLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEM 241 Query: 244 DPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVK 289 + ++TI+ + I ++ +P+LLVYPF+Q++F G ++G+VK Sbjct: 242 GSGSPP--PEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 171/286 (59%), Gaps = 7/286 (2%) Query: 9 RVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEAYAKTFDNA 68 R + N + + I ++ LLPL ++++ S + ++F P +T+E Y + F + Sbjct: 21 RRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQ 80 Query: 69 NFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITMLFSGGLIP 128 + L S+ + AL ++++ AY LSK+ V R ++ ++TM F GGL+P Sbjct: 81 SILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLV--GRRWINYFLIVTMFFGGGLVP 138 Query: 129 GYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRTVPKDLEEAAFIDGAGQFRTFYSI 188 Y+L+ +LG++++ A+I+PG V V+NIIL +F+ +P++L EAA IDGA + F+ I Sbjct: 139 TYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKI 198 Query: 189 YLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQADMTKLDPAAV 248 LP++ P++ + L+ VG WN+YFD +IYIKD + PL ++ I++Q+ + A Sbjct: 199 MLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQ 258 Query: 249 ANLSQ-----RTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVK 289 A +++ I+ + I IS+LP++++YPF Q+YF GI+ G++K Sbjct: 259 AAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLK 304 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,858,226 Number of extensions: 709306 Number of successful extensions: 2897 Number of sequences better than 1.0e-05: 170 Number of HSP's gapped: 2707 Number of HSP's successfully gapped: 170 Length of query: 290 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 185 Effective length of database: 26,268,361 Effective search space: 4859646785 Effective search space used: 4859646785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)