BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0181.0001.p (562 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 308 2e-83 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 71 4e-12 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 71 4e-12 SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 63 1e-09 BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic... 51 4e-06 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/500 (36%), Positives = 271/500 (54%), Gaps = 24/500 (4%) Query: 75 GDTKENNVHDRWMLETLGIKHKDTWYPANDDQYRQKLQLAISSGEKLPDFVSVPTNAVLT 134 G+ +NV RW E LGIK W ND+Q+ +L+L +SSGEKLPD V A+ Sbjct: 58 GEDVHDNVVTRWAEEELGIKFVTEWTQPNDEQFNTQLRLMMSSGEKLPDVFQVNDTAIKA 117 Query: 135 NQLIDSGQFIPIDELFDKYANKILKDHAAAHPELWYPFMRDGKKYNMPILEYTDNDDTLL 194 + L+ SG +P+DE + YA+ LK P+ +YP +DG +Y +P + DTLL Sbjct: 118 D-LLSSGLVMPVDEAIETYASPRLKQLFEQFPQAFYPSTKDGVRYGIPRFSGGNGSDTLL 176 Query: 195 WLREDWMEKLKLEAPKTIADLENIMDKFKNQNPDGLAPKDVYPLAISLKNKTNTWMGS-- 252 W+R+DW++K LE P T+ +LE+IMD F N++P+ D + I+ + G Sbjct: 177 WIRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPNETGKNDT--IGITFAAGDYGFRGGNI 234 Query: 253 --LDWLVGAYGT-IEEQWNKDANGNLEYGSVNPGAKQALAKLKEWMDKGYIHADSALWDE 309 W+ GA+G + W+K +G+L YGS+ P K LAK+ EW +KGY+ D A+ Sbjct: 235 ADSSWVFGAFGDFVPGAWSKGDDGSLVYGSIQPSMKDGLAKIHEWYEKGYLATDFAILSA 294 Query: 310 GKSAESWTKGTAGILPGANWVPDWPAPDLLKNVKGSKYKAYPIPAGPDGLIGTKWQNSGV 369 G + ES+ G +GI+ W +P ++ + V + K +P +GP+G G + + V Sbjct: 295 GDAQESFISGRSGIMAAPPWAHGYPIGEMAQVVPDAIVKPFPHVSGPNGQAGRRGEGY-V 353 Query: 370 NASIMINKDAKHPEAIFLYYNYLLDNMANPTAGSP--YEYGFAKGYDWDIIDGQPTSDKE 427 S + NKD +H + F Y+ D + T G +EYG +GYD+ + DG+P D Sbjct: 354 VGSFLFNKDFEHMDKFFEYW----DAIYGYTFGESDYFEYGLFEGYDYVMEDGEPVYDHA 409 Query: 428 KIKDFSNEFPFLTG----PARIPDLYMKTLVKL----ANGEKPVTPYEKQMAEFRKPENW 479 + ++ + E G P +P + + L G +P T YE +A R P+ Sbjct: 410 QFEEITGEEVVDPGRYFLPTNVPTIPFEMYSLLEEFHETGREPETGYEAGLAG-RDPDYI 468 Query: 480 AAAKIVMSQQNIRKQNYFTGAATPTMVSKWNLLRQSEMETFNKIIYGKLPVDAFDEFVTN 539 AA IV Q ++R N F G TPTMVS+ L + E E F IIYG P+DAFD+FV Sbjct: 469 EAAAIVNRQNDLRIINEFNGPPTPTMVSRSEHLERMEDELFVDIIYGNKPLDAFDQFVEE 528 Query: 540 WKANGGDQITKEVNDWYKSV 559 W+ +GG+ IT+EVN+WY+SV Sbjct: 529 WRQSGGEAITEEVNEWYESV 548 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 111/468 (23%), Positives = 185/468 (39%), Gaps = 47/468 (10%) Query: 99 WYPANDDQYRQKLQLAISSGEKLPDFVSVP---TNAVLTNQLIDSGQFIPIDELFDKYAN 155 W P D ++ A++SG LP +++ T++VL SGQF I D++ N Sbjct: 86 WVP--DAVKEDRVNAALASG-NLPKVITLQDFRTSSVL--NAFRSGQFWEIGPYLDEFPN 140 Query: 156 KILKDHAAAHPELWYPFMRDGKKYNMPILEYTDNDDTLLWLREDWMEKLKLEAPKTIADL 215 + + + DGK Y I + +R+DW+E L LE P + +L Sbjct: 141 -----LSEMNETILENVSVDGKIYG--IYRERPLSRQGVVIRQDWLENLGLEMPTNLEEL 193 Query: 216 ENIMDKFKNQNPDGLAPKDVYPLAISLKNKTNTWMGSLDWLVGAYGTIEEQWNKDANGNL 275 + F +P+G D + ++ + G+ L +GT E W D G L Sbjct: 194 YEVARAFTYDDPNGSGADDT----VGFTDRNDLIFGAFKTLASYHGTPNE-WGFDDEGKL 248 Query: 276 EYGSVNPGAKQALAKLKEWMDKGYIHADSALWDEGKSAESWTKGTAGILPGANWVPDWPA 335 + + + +K D+G I+ + + + + E + G AGI G N V Sbjct: 249 MPEFMTDEYVETMNYMKSLYDEGLINTEFPVTSKEQQQELFMTGRAGIYVG-NMVDARNL 307 Query: 336 PDLLKNVKGSKYKAYP-IPAGPDGLIGTKWQNSGVNASIMINKDAKHPEAIFLYYNYLLD 394 D K++ A AGPDG W G N I K + EA D Sbjct: 308 RDKAKDINPEMEVAITNRIAGPDGE-DRVWAQGGHNGIFAIPKSSVETEAELKRILAFFD 366 Query: 395 NMANPTAGSPYEYGFAKGYDWDIIDGQPTSD-KEKIKDFSNEF-PFLTGPARIPDLYMKT 452 +A + YG + ++ IDG+ +E + D++ E P ++ AR + Y+K Sbjct: 367 RIAEEDVYNLMAYGIEDVH-YETIDGEYFERIEENLDDWAAEVQPLVSLVAREMN-YLK- 423 Query: 453 LVKLANGEKPVTPYEKQMAEFRKPENWAAAKIVMSQQNIRKQNYFTGAATPTMVSKWNLL 512 A G+ YE+ + I N +PT + L Sbjct: 424 ----AYGDPLYEEYER---------------LTEDNNEIIVTNPAEPLFSPTYTERGTEL 464 Query: 513 RQSEMETFNKIIYGKLPVDAFDEFVTNWKANGGDQITKEVNDWYKSVS 560 ++ + K I G+L D F+ V W NGG+ I +E+N+ Y+ ++ Sbjct: 465 QKIIDDATYKYILGELDEDGFEAEVERWLTNGGESIIEELNEDYERLN 512 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 118/498 (23%), Positives = 193/498 (38%), Gaps = 93/498 (18%) Query: 92 GIKHKDTWYPANDDQYRQKLQLAISSGEKLPDFVSVPTNAVLTNQLIDSGQFIPIDELFD 151 G + K TW P D Y K + ++SGE +P + + + + + +G F + Sbjct: 65 GKEIKVTWVP--DSSYNDKFNIVMASGE-MPHAIVIKDKSAGFIKSVKAGAFWELSPYLK 121 Query: 152 KYAN------KILKDHAAAHPELWYPFMRDGKKYNMPILEYTDNDDTLLWLREDWMEKLK 205 Y N KILK+ + +G+ Y I D + +R DW++ + Sbjct: 122 DYKNLSQADEKILKNSSV-----------NGEVYG--IYRTRDLIRACMIIRTDWLKNVG 168 Query: 206 LEAPKTIADLENIMDKFKNQNPDGLAPKDVYPLAISLKNKTNTWMG--------SLDWLV 257 L+ P+T+ D ++ FK ++PDG D Y + + WMG L Sbjct: 169 LDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVP------KWMGLGNGSPWDVLQIWF 222 Query: 258 GA---YGTIEEQWNKDANGNLEYGSVNPGAKQALAKLKEWMDKGYIHADSALWDEGKSAE 314 GA YG NG L AL K+ D+G I+ D A+ D K + Sbjct: 223 GAPNRYGV--------ENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWND 274 Query: 315 SWTKGTAGI----------LPGANWVPDWPAPDLLKNVKGSKYKAYPIPAGPDGLIGTKW 364 KG AG+ + A D D++ ++ GS GP+G + Sbjct: 275 PVVKGKAGVIVDTGSRASQIQSAMEEADESNKDII-DIVGS-------LEGPNG--KRTF 324 Query: 365 QNSGVNASIMINKDAKHPEAIFLYYNYLLDNMANPTAGSPYEYGFAKGYDWDIIDGQPTS 424 SG + I I K + E LD M + A G KG ++++ DG TS Sbjct: 325 PTSGYSGMITIPKSSVKTEKELKEVLSFLDKMNDKEAQILTNNG-VKGRNYELKDGVFTS 383 Query: 425 DKEKIKDFSNEFPFLTG-PARIP--DLYMK-TLVKLANGEKPVTPYEKQMAEFRKPENWA 480 ++ K E L IP + Y++ KL K + +++A F E+ Sbjct: 384 LEKNNKSLLYEHEGLAQFSMSIPKSEYYIEDQKTKLFQHRKDIITEGEKIAVFNPAESLV 443 Query: 481 AAKIVMSQQNIRKQNYFTGAATPTMVSKWNLLRQSEMETFNKIIYGKLPVDAFDEFVTNW 540 + V +Q+ + N A T + I G++ FD+ V W Sbjct: 444 SD--VYTQKGAQLDNIILDART-------------------QFIIGEIDEKGFDDAVELW 482 Query: 541 KANGGDQITKEVNDWYKS 558 K +GG+++ K++N Y+S Sbjct: 483 KKSGGNELMKDLNKLYQS 500 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 37/269 (13%) Query: 107 YRQKLQLAISSGEKLPDFVSVPTNAVLTNQLID---SGQFIPIDELFDKYA---NKILKD 160 + +K L ISSG+ LPD ++ + L++ G IP+++L DKY KIL + Sbjct: 89 FAEKRNLDISSGD-LPD--AIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDE 145 Query: 161 HAAAHPELWYPFMRDGKKYNMP-ILEYTDNDDT------LLWLREDWMEKLKLEAPKTIA 213 + P DG Y+ P I E D ++ + W+ +DW++KL LE PKT Sbjct: 146 KPEYKALMTAP---DGHIYSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTD 202 Query: 214 DLENIMDKFKNQNPDGLAPKDVYPLAISLKNKTNTWMGSLDWLVGAYGT--IEEQWNKDA 271 DL +++ FKN +P+G D P + N + +L A+G ++ Sbjct: 203 DLIKVLEAFKNGDPNGNGEADEIPFSFISGNGNEDFK----FLFAAFGIGDNDDHLVVGN 258 Query: 272 NGNLEYGSVNPGAKQALAKLKEWMDKGYIHADSALWDEGKSAESWTKGTAGILPGANWVP 331 +G +++ + N K+ + +++ +KG I ++ D G+ W Sbjct: 259 DGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQKFGVY--FTWDK 316 Query: 332 DWPAPDLLKNVKGS--KYKAYPIPAGPDG 358 + NV GS Y P+ AGP G Sbjct: 317 N--------NVTGSNESYDVLPVLAGPSG 337 >BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 88/383 (22%), Positives = 149/383 (38%), Gaps = 47/383 (12%) Query: 98 TWYPANDDQYRQKLQLAISSGEKLPDFVSVP--TNAVLTNQLIDSGQFIPIDELFDKY-- 153 TW P D +L A+++G LP V++ N+ + N SG F I + Y Sbjct: 65 TWVP--DAVKEDRLNAALAAGN-LPQIVTIQDIKNSSVMNAF-RSGMFWEIGDYIKDYPN 120 Query: 154 ---ANKILKDHAAAHPELW-----YPFMRDGKKYNMPILEYTDNDDTLLWLREDWMEKLK 205 NK++ + +L+ P R G + +R+DW++ L Sbjct: 121 LNKMNKLINKNVTIDGKLYGIYRERPLSRQG-----------------IVIRKDWLDNLN 163 Query: 206 LEAPKTIADLENIMDKFKNQNPDGLAPKDVYPLAISLKNKTNTWMGSLDWLVGAYGTIEE 265 L+ PKT+ +L + F +PD D + LA ++ + G+ +G+Y + Sbjct: 164 LKTPKTLDELYEVAKAFTEDDPDKDGKDDTFGLA----DRNDLIYGAFK-TIGSYEGMPT 218 Query: 266 QWNKDANGNLEYGSVNPGAKQALAKLKEWMDKGYIHADSALWDEGKSAESWTKGTAGILP 325 W K++ G + K + +K+ D GY++ D + + + E +++G AGI Sbjct: 219 DW-KESGGKFTPDFMTQEYKDTMNYMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAGIYI 277 Query: 326 GANWVPDWPAPDLLKNVKGSKYKAYPIPAGPDGLIGTKWQNSGVNASIMINKDAKHPEAI 385 G N V D + K K + GPDG W + G N K + EA Sbjct: 278 G-NMVDAVNLRDHASD-KSMKLEIINRIKGPDGKERV-WASGGHNGVFAFPKTSVKTEAE 334 Query: 386 FLYYNYLLDNMANPTAGSPYEYGFAKGYDWDIIDGQPTSDKEKIKDFSNEFPFLTGPARI 445 D +A S YG + D T + ++KD+ + L+ I Sbjct: 335 LKRILAFFDRIAEEDVYSLMTYGIDGVHYNKGEDKTFTRKESQVKDWQTDIQPLSALIAI 394 Query: 446 PDLYMKTLVKLANGEKPVTPYEK 468 Y+K G+ T YE+ Sbjct: 395 DKAYLKN-----TGDPLRTAYEE 412 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.134 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 45,060,143 Number of extensions: 2087223 Number of successful extensions: 3562 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 3552 Number of HSP's successfully gapped: 6 Length of query: 562 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 450 Effective length of database: 25,461,023 Effective search space: 11457460350 Effective search space used: 11457460350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)