BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0027.p (169 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2578 [J] COG1670 Acetyltransferases, including N-acetylases of... 55 4e-08 BH0443 [J] COG1670 Acetyltransferases, including N-acetylases of... 55 5e-08 BH0585 [J] COG1670 Acetyltransferases, including N-acetylases of... 55 5e-08 lin0009 [J] COG1670 Acetyltransferases, including N-acetylases o... 52 6e-07 STM1502 [J] COG1670 Acetyltransferases, including N-acetylases o... 50 1e-06 >PA2578 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 186 Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 76 NLSICIKRIVV--QSKGRGYGKSTLALLMHWVFTQTPAHRLWLDVKDYNTRAHHVYVRAG 133 N + + RIV+ ++G+G G L L+ F R+ L+V D+N A H+Y RAG Sbjct: 89 NGVVRLARIVLAPSARGQGLGLPMLEALLAEAFADADIERVELNVYDWNAAARHLYRRAG 148 Query: 134 FTAEGTLRDCIRTDDSFESLMIMSILRQEY 163 F EG R R ++++M +LRQE+ Sbjct: 149 FREEGLRRSATRVGRERWNVVLMGLLRQEW 178 >BH0443 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 178 Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 23/179 (12%) Query: 6 EIVDLRKTTIKDLEFVMHAEGSEPNRRFIGQWSIEQHTAALEDSDIL------------H 53 E++D ++ L + H E E F+ QWS T L S + Sbjct: 3 ELLDFNESDFDQL--LKHIESPE----FLKQWSGSAFTYPLTRSQLASYIDGANMDGSDQ 56 Query: 54 LIIREK---TGEPAGYVILTGLLDPNLSICIKRIVV--QSKGRGYGKSTLALLMHWVFTQ 108 I + K + E G++ L + N S + +++V ++G+G+ + L+ F Q Sbjct: 57 YIFKVKAVGSSETIGHIALGKVDRVNESARMGKVLVFPAARGKGFAAPMIEELLRIAFEQ 116 Query: 109 TPAHRLWLDVKDYNTRAHHVYVRAGFTAEGTLRDCIRTDDSFESLMIMSILRQEYIKRR 167 +R+ L V +N RA H Y + GF EG LR + + L+ MS+L++E+ +R+ Sbjct: 117 LSLNRVSLGVFSFNVRAIHRYEKIGFQREGLLRQNTKVKGEYWDLIEMSMLKREWNERK 175 >BH0585 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 182 Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 2/128 (1%) Query: 39 IEQHTAALEDSDILHLIIREKTGEPAGYVILTGLLDPNLSICIKRIVVQS--KGRGYGKS 96 I + AA D+ L LI +++ E G V LT ++ NL C + G+GY Sbjct: 54 IREMEAAKADTGYLFLICLKESDEVIGEVSLTEVVRGNLQSCWIGYFLDKVHNGKGYMTE 113 Query: 97 TLALLMHWVFTQTPAHRLWLDVKDYNTRAHHVYVRAGFTAEGTLRDCIRTDDSFESLMIM 156 + L++ + FT+ HR+ V +N + +V ++AGF EG R ++ + +E + Sbjct: 114 AVKLVVDYAFTELAFHRIEAGVMPHNIGSINVLLKAGFQKEGLARKNVKINGRWEDHQTL 173 Query: 157 SILRQEYI 164 +IL E + Sbjct: 174 AILEGETV 181 >lin0009 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 301 Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 2/83 (2%), Positives = 10/83 (12%), Gaps = 2/83 (2%) Query: 83 RIVVQSK--GRGYGKSTLALLMHWVFTQTPAHRLWLDVKDYNTRAHHVYVRAGFTAEGTL 140 I G + + + Sbjct: 85 SIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLAS 144 Query: 141 RDCIRTDDSFESLMIMSILRQEY 163 + + +++ Sbjct: 145 QMNFLDIVPISAETGLNVDTIAA 167 >STM1502 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 186 Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 13/171 (7%) Query: 8 VDLRKTTIKDLEFVMHAEGSEPNRRFIGQWSIEQHTAALEDSDILHLIIREKT------- 60 V LR +DL FV + + R+ W E + A +E SD+ I +++ Sbjct: 7 VRLRPLEREDLRFVHQLDNNASVMRY---WFEEPYEAFVELSDLYDKHIHDQSERRFVVE 63 Query: 61 --GEPAGYVILTGLLDPNLSICIKRIVV-QSKGRGYGKSTLALLMHWVFTQTPAHRLWLD 117 GE AG V L + + + I+ + +G+G L M + FT ++L+L Sbjct: 64 CDGENAGLVELVEINHVHRRAEFQIIISPEYQGKGLASRAAKLAMDYGFTVLNLYKLYLI 123 Query: 118 VKDYNTRAHHVYVRAGFTAEGTLRDCIRTDDSFESLMIMSILRQEYIKRRR 168 V N +A H+Y + GF EG L + + + + M I +Q+Y+ + Sbjct: 124 VDKENEKAIHIYRKLGFRVEGELIHEFFINGEYRNTIRMCIFQQQYLDEHK 174 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,410,930 Number of extensions: 473870 Number of successful extensions: 1068 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 1073 Number of HSP's successfully gapped: 11 Length of query: 169 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 70 Effective length of database: 26,960,365 Effective search space: 1887225550 Effective search space used: 1887225550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 112 (47.8 bits)