BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0026.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR1359 [P] COG1464 ABC-type metal ion transport system, periplas... 206 3e-53 PA3931 [P] COG1464 ABC-type metal ion transport system, periplas... 206 4e-53 PA5505 [P] COG1464 ABC-type metal ion transport system, periplas... 197 2e-50 DR1358 [P] COG1464 ABC-type metal ion transport system, periplas... 197 2e-50 Cj0772c [P] COG1464 ABC-type metal ion transport system, peripla... 193 3e-49 >DR1359 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 11/238 (4%), Positives = 34/238 (14%), Gaps = 2/238 (0%) Query: 41 TLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPYL 100 V + K ++ + + + Q+ D + + Sbjct: 20 AADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAI 79 Query: 101 DSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXXX 160 + + F + + Sbjct: 80 IKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEV-TDADVD 138 Query: 161 XXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGIDP 220 E + + + Sbjct: 139 GMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGF 198 Query: 221 -KSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 + +V + K A+ V+ + + F Sbjct: 199 EDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRF 256 >PA3931 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 12/237 (5%), Positives = 43/237 (18%), Gaps = 2/237 (0%) Query: 42 LKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPYLD 101 ++ + ++ + + +V + + + N+ + Sbjct: 24 IETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEK 83 Query: 102 SIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXXXX 161 K+ + ++ + EL I + A Sbjct: 84 INPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDT 143 Query: 162 XXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGIDP- 220 + + D + ++ D Sbjct: 144 LRKQQATWKEK-DGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGI 202 Query: 221 KSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 K E+ + + + K + + + Sbjct: 203 KGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVE 259 >PA5505 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 13/238 (5%), Positives = 32/238 (13%), Gaps = 2/238 (0%) Query: 41 TLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPYL 100 + + + I K + V L + + Sbjct: 24 IETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEK 83 Query: 101 DSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXXX 160 + G Y E E A Sbjct: 84 INPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDT 143 Query: 161 XXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGIDP 220 + + F D A+ ++ Sbjct: 144 LRKQQATWK-EKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGI 202 Query: 221 -KSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 E + + ++ + ++ Sbjct: 203 KGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVED 260 >DR1358 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 11/238 (4%), Positives = 34/238 (14%), Gaps = 2/238 (0%) Query: 41 TLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPYL 100 V + K ++ + + + Q+ D + + Sbjct: 20 AADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAI 79 Query: 101 DSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXXX 160 + + F + + Sbjct: 80 IKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEV-TDADVD 138 Query: 161 XXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGIDP 220 E + + + Sbjct: 139 GMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGF 198 Query: 221 -KSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 + +V + K A+ V+ + + F Sbjct: 199 EDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRF 256 >Cj0772c [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 10/238 (4%), Positives = 38/238 (15%), Gaps = 4/238 (1%) Query: 41 TLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPYL 100 +++ + ++ + + +V + + + N+ + Sbjct: 23 SIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKE 82 Query: 101 DSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXXX 160 K+ + ++ + EL I + A Sbjct: 83 KINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLD 142 Query: 161 XXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGIDP 220 + V+ Sbjct: 143 TLRKQQATWKE---KDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFE 199 Query: 221 -KSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 + EN + + + + + Sbjct: 200 DGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFG 257 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,173,525 Number of extensions: 656788 Number of successful extensions: 1172 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 1103 Number of HSP's successfully gapped: 36 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 115 (48.9 bits)