BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0025.p (222 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2351 [P] COG2011 ABC-type metal ion transport system, permease... 102 6e-22 lin2513 [P] COG2011 ABC-type metal ion transport system, permeas... 94 2e-19 SA0421 [P] COG2011 ABC-type metal ion transport system, permease... 93 3e-19 YPO1072 [P] COG2011 ABC-type metal ion transport system, permeas... 93 3e-19 STM0246 [P] COG2011 ABC-type metal ion transport system, permeas... 92 5e-19 >PA2351 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 94/213 (44%) Query: 5 MVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAINGVR 64 M+E LW G TL M+ SS GG+ A +NR++ +N +R Sbjct: 4 MLERLWQGFLDTLLMIGASSAIVLLVGIPLALVLVTTGPGGIFEARLLNRILGGLVNVLR 63 Query: 65 SXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKIEAAK 124 S GTS G AA+V L+I A PF RI E SLREV+ G +EAA+ Sbjct: 64 SVPFLILMVALIPFTRMIVGTSYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLVEAAQ 123 Query: 125 SVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFGYQRF 184 ++G II V++PEA P +V G TI ++++ + R+GYQRF Sbjct: 124 AMGCERRHIICNVLLPEARPGIVGGFTITLVTMINSSAMAGAIGAGGLGDLAYRYGYQRF 183 Query: 185 RTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRK 217 T + GD +A ++++ Sbjct: 184 DTQVMLTVIIVLVLLVTLIQFGGDRLARLLNKR 216 >lin2513 [P] COG2011 ABC-type metal ion transport system, permease component Length = 224 Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 2/212 (0%) Query: 7 ELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLIST-AINGVRS 65 +++W ++TLYM +S+F R+ I+ +N RS Sbjct: 14 QMMWVATQETLYM-TLTSLFAVFLLGIVLGLLLFLTNNKKHAGARILYWITAILVNVFRS 72 Query: 66 XXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKIEAAKS 125 GT +GP AA+ +L I AAPF GR++E + REV+ G IEAAKS Sbjct: 73 IPFIILIVLLLPMTKSLVGTVIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKS 132 Query: 126 VGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFGYQRFR 185 +GA+ TII +V+IPEALPA++ G+T+ IS+ FT G+QR + Sbjct: 133 MGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLGNTAYLEGFQRGQ 192 Query: 186 TDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRK 217 D + GD++ D++ Sbjct: 193 PDVTVLATIIILIIVFIFQFIGDFLTKRTDKR 224 >SA0421 [P] COG2011 ABC-type metal ion transport system, permease component Length = 219 Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 88/176 (50%) Query: 9 LWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAINGVRSXXX 68 L L +TLYMV+ + + G+ P ++++++ IN +RS Sbjct: 11 LLQALYETLYMVSIALFLGAVIGIPLGVLLVITRKQGIWPNIVIHQVLNPLINILRSLPF 70 Query: 69 XXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKIEAAKSVGA 128 GTS+G TAAIV L++ AP++ R++E+SL EV+ G IEAAK++GA Sbjct: 71 IILLIAIVPFTKLVVGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDEGIIEAAKAMGA 130 Query: 129 HPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFGYQRF 184 PL II +IPEAL +LV +T A+I + T +GYQRF Sbjct: 131 SPLQIIRYFLIPEALGSLVLAITTAIIGLIGSTAMAGAVGGGGIGDLALVYGYQRF 186 >YPO1072 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 98/217 (45%) Query: 1 MKEDMVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAI 60 M E M+ L+ G+ +TL M S F G ++ ++ R +S + Sbjct: 1 MSEAMMWLMARGVWETLMMTFVSGFFGFVLGLPVGVLLYVTRPGQIIANNKIYRTLSGVV 60 Query: 61 NGVRSXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKI 120 N RS GTS+G AAIV L++GAAPF+ R++E++L E+ G + Sbjct: 61 NIFRSIPFIILLVWMIPFTRMIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLV 120 Query: 121 EAAKSVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFG 180 EAA+++GA P+ II +V++PEALP LV TI +I++ ++ ++G Sbjct: 121 EAARAMGATPMQIIKKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYG 180 Query: 181 YQRFRTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRK 217 Y + SGD I ++ K Sbjct: 181 YIGYNATVMNTVLVLLVILVYLIQLSGDRIVKAVTHK 217 >STM0246 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 98/217 (45%) Query: 1 MKEDMVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAI 60 M E M+ LL G+ +TL M S F G ++ R+ R +S + Sbjct: 1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIMENARLYRSLSAVV 60 Query: 61 NGVRSXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKI 120 N RS GTS+G AAIV L++GAAPF+ R++E++L E+ G I Sbjct: 61 NIFRSIPFIILLVWMIPFTRIIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPAGLI 120 Query: 121 EAAKSVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFG 180 EA++++GA PL I+ ++++PEALP LV TI +I++ ++ ++G Sbjct: 121 EASRAMGATPLQIVRKILLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYG 180 Query: 181 YQRFRTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRK 217 Y + SGD I ++ K Sbjct: 181 YIGYNATVMNTVLVLLVVLVYLIQLSGDRIVRAVTHK 217 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,370,220 Number of extensions: 260643 Number of successful extensions: 1106 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 1102 Number of HSP's successfully gapped: 11 Length of query: 222 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 120 Effective length of database: 26,614,363 Effective search space: 3193723560 Effective search space used: 3193723560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)